Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0819 ATGATGCTCGATCACCACTCCCAACACTCCGACCAAACTCGCAGTTCCGTCGAAGCCGATGATGATTCCGACCCTCTCCTTCCTACTCTCTCTACGCCGGTTATCGTCAATGGAGCCGACTGCGAGAATGCCGGAGATGACCTCTTCGTCCCTCCCCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCCTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAGCATGGATTTCCTCAAGTCGAATGGGATCCGATTGTTTCAATTCGGGATTGAAGGTACTAAGGCCGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTATTATTTGGAGCCTTTTGTTAACATTCCAGACGATACAATTCGTGAAGCACTTAAAGTTATCCTTGATGTGAGGAACCGCCCAGTTTTAATCCATTGCAAACGAGGAAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCCTCAGTCTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATCGAACTATTCGACATTTCTGGCTTGAAGCATCTGCCATCTTCATTTTCATGTTCCAAAAGGTAA 726 47.25 MMLDHHSQHSDQTRSSVEADDDSDPLLPTLSTPVIVNGADCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASMDFLKSNGIRLFQFGIEGTKAGSDKVDAYVNLILECMRNLDMSADQMYYLEPFVNIPDDTIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSFSCSKR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8491638 8494077 - Lag0015191.1 Lac12g0819 589416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0819 241 MobiDBLite consensus disorder prediction 1 21 - -
Lac12g0819 241 Gene3D Protein tyrosine phosphatase superfamily 48 228 IPR029021 -
Lac12g0819 241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 226 IPR029021 -
Lac12g0819 241 Pfam Tyrosine phosphatase family 50 231 IPR004861 -
Lac12g0819 241 ProSitePatterns Tyrosine specific protein phosphatases active site. 174 184 IPR016130 GO:0016311(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 152 166 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 CDD PFA-DSP_Siw14 48 225 - -
Lac12g0819 241 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 238 IPR020422 GO:0006470(InterPro)
Lac12g0819 241 PANTHER TYROSINE-PROTEIN PHOSPHATASE 22 235 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Lac12g0819 241 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0819 K18045 - - csv:101209768 339.732
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0819 Lac-Chr12:8491638 Lac3g1690 Lac-Chr3:16788545 1.20E-55 dispersed
Lac12g0819 Lac-Chr12:8491638 Lac9g2220 Lac-Chr9:41611281 1.10E-82 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac2g2055 . 84 237 Protein tyrosine phosphatase (PTP) family AT1G71860 56.8 4.2e-43 172.9
Lac3g0027 . 1 760 Protein tyrosine phosphatase (PTP) family AT5G23720 66.4 8.1e-275 944.1
Lac12g2326 . 33 170 Protein tyrosine phosphatase (PTP) family AT3G06110 59.4 9.3e-44 174.1
Lac12g0829 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 78.1 5.1e-72 268.1
Lac13g0651 . 140 324 Protein tyrosine phosphatase (PTP) family AT3G52180 75.7 8.6e-82 301.2
Lac13g1219 . 33 282 Protein tyrosine phosphatase (PTP) family AT3G10940 71.5 4.5e-107 385.2
Lac8g0287 . 29 477 Protein tyrosine phosphatase (PTP) family AT3G01510 73.3 1.6e-204 709.5
Lac9g2220 . 9 212 Protein tyrosine phosphatase (PTP) family AT2G32960 59.8 1.2e-74 277.3
Lac12g0819 . 33 241 Protein tyrosine phosphatase (PTP) family AT2G32960 63.4 6.6e-73 271.6
Lac5g0369 . 1 332 Protein tyrosine phosphatase (PTP) family AT2G35680 54.4 7.7e-98 354.8
Lac6g3049 . 12 263 Protein tyrosine phosphatase (PTP) family AT2G35680 54.7 2.5e-80 296.6
Lac6g3049 . 27 218 Protein tyrosine phosphatase (PTP) family AT5G56610 50.5 1.1e-45 180.6
Lac9g2220 . 18 212 Protein tyrosine phosphatase (PTP) family AT4G03960 70.8 4.4e-77 285.0
Lac12g0819 . 42 241 Protein tyrosine phosphatase (PTP) family AT4G03960 64.5 1.1e-70 263.8
Lac3g1690 . 120 291 Protein tyrosine phosphatase (PTP) family AT4G03960 57.0 1.3e-55 213.8
Lac3g1690 . 115 304 Protein tyrosine phosphatase (PTP) family AT3G02800 70.0 6.3e-79 291.2
Lac9g2220 . 34 206 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 9.9e-56 214.2
Lac12g0819 . 40 230 Protein tyrosine phosphatase (PTP) family AT3G02800 50.3 5.6e-51 198.4
Lac13g0933 . 1 188 Protein tyrosine phosphatase (PTP) family AT3G55270 65.6 1.4e-62 238.8
Lac8g0876 . 1 406 Protein tyrosine phosphatase (PTP) family AT5G39400 66.8 6.2e-158 554.7
Lac12g0225 . 32 611 Protein tyrosine phosphatase (PTP) family AT3G19420 65.7 5.1e-217 751.5
Lac1g2600 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.7 1.6e-202 703.4
Lac1g2600 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 60.9 7.2e-190 661.4
Lac12g0225 . 6 611 Protein tyrosine phosphatase (PTP) family AT3G50110 55.4 6.8e-180 628.2
Lac3g0209 . 1 1257 Protein tyrosine phosphatase (PTP) family AT5G58160 51.7 0.0e+00 1085.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT3G10550 68.6 0.0e+00 1169.5
Lac8g2327 . 1 854 Protein tyrosine phosphatase (PTP) family AT5G04540 66.2 0.0e+00 1116.3
Lac9g2686 . 17 246 Protein tyrosine phosphatase (PTP) family AT3G44620 56.3 3.7e-71 265.8
Lac5g0274 . 23 309 Protein tyrosine phosphatase (PTP) family AT2G35320 63.8 3.7e-107 385.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83