Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0819 ATGATGCTCGATCACCACTCCCAACACTCCGACCAAACTCGCAGTTCCGTCGAAGCCGATGATGATTCCGACCCTCTCCTTCCTACTCTCTCTACGCCGGTTATCGTCAATGGAGCCGACTGCGAGAATGCCGGAGATGACCTCTTCGTCCCTCCCCTGAACTTCGCCGTCGTTGACAATGGCATTTTCCGCTCCGGCTTCCCCGACTCTTCCAACTTCTCCTTCTTGCAGACCTTAGGCCTTCGTTCGATTATATGTCTTTGTCCTGAGCCATATCCTGAGGCGAGCATGGATTTCCTCAAGTCGAATGGGATCCGATTGTTTCAATTCGGGATTGAAGGTACTAAGGCCGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTATTATTTGGAGCCTTTTGTTAACATTCCAGACGATACAATTCGTGAAGCACTTAAAGTTATCCTTGATGTGAGGAACCGCCCAGTTTTAATCCATTGCAAACGAGGAAAGCACCGAACTGGTTGTGTTGTGGGATGCTTTAGAAAGTTGCAGAAATGGTGCCTATCCTCAGTCTTTGATGAGTACCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGGTTCATCGAACTATTCGACATTTCTGGCTTGAAGCATCTGCCATCTTCATTTTCATGTTCCAAAAGGTAA 726 47.25 MMLDHHSQHSDQTRSSVEADDDSDPLLPTLSTPVIVNGADCENAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASMDFLKSNGIRLFQFGIEGTKAGSDKVDAYVNLILECMRNLDMSADQMYYLEPFVNIPDDTIREALKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKLQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKHLPSSFSCSKR 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8491638 8494077 - Lag0015191.1 Lac12g0819 589416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0819 241 MobiDBLite consensus disorder prediction 1 21 - -
Lac12g0819 241 Gene3D Protein tyrosine phosphatase superfamily 48 228 IPR029021 -
Lac12g0819 241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 226 IPR029021 -
Lac12g0819 241 Pfam Tyrosine phosphatase family 50 231 IPR004861 -
Lac12g0819 241 ProSitePatterns Tyrosine specific protein phosphatases active site. 174 184 IPR016130 GO:0016311(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 PRINTS Plant and fungal dual specificity phosphatase signature 152 166 IPR020428 GO:0016791(InterPro)
Lac12g0819 241 CDD PFA-DSP_Siw14 48 225 - -
Lac12g0819 241 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 238 IPR020422 GO:0006470(InterPro)
Lac12g0819 241 PANTHER TYROSINE-PROTEIN PHOSPHATASE 22 235 - GO:0005737(PANTHER)|GO:0016791(PANTHER)
Lac12g0819 241 MobiDBLite consensus disorder prediction 1 24 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0819 Lac-Chr12:8491638 Lac3g1690 Lac-Chr3:16788545 1.20E-55 dispersed
Lac12g0819 Lac-Chr12:8491638 Lac9g2220 Lac-Chr9:41611281 1.10E-82 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0819 K18045 - csv:101209768 339.732