Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0829 ATGAGGAAGAGGGAAAGAGAAAACCCTTGTGGGGTTTGCGGCCACTATCACAAATACGAAGAAGGGGAAGTTTGTGGAATTTGTGGTCATCGTGTTCCAGCTACATCGGAGAAAACTTCTTTGCAAGTTAGCGCGTTTCCTTCAGAGATCTTGCCGGAGTTTCTTTATTTGGGAAGCTATGATAATGCTTCGCGGTCTGAACTTTTGAAGACTCAAGGAATTTCTCGCGTTCTTAACACTGTGCCTGCTTGTCAAAATCTCTACAAGAACTCCTTCACGTATCACTGCCTCCAATACGATAAGACCTTACCTTTTGATGACGCGGTTGAATTTCTAGAGCAATGCGAAAGAGACAAGGCTCGTGTTCTGGTGCACTGCATGTCAGGGAAAAACAGGTCTCCAGCTATTGTAATAGCATTCTTGATGAAATGCAAAGGTTGGAGACTTGCTCAGAGTTACCAGTGGGTGAAAGAGCGGAGGCCATCCGTCGACTTAACTGAGCCTGTCTATCAGCAGCTGCAAGAGTATGAGCAGAAGGTTTTTGGATCGGCAGAAAACTCCCTCCCAACCTTGCCAATCTTCCCTCCTGCTGGTCTGCCTTCTTTTAGCTTCGGCTTCCCGAAGACCGGCGACCCAGTTCCTATAACTCCATTCAATGCCATTGGCACAACATCGATCTTTTCTCGCCCAACCTTAGACGTACCTTCCCACGAGTTTACATTTGGTGCTGGCCAGGCTCAAAACAGTTTCTCCGGAAGCCCTTTCGGCACCAATCCACGGAACTCAACCAGCAGCAACATCCAAATGGACAGTGCTTAA 819 47.5 MRKRERENPCGVCGHYHKYEEGEVCGICGHRVPATSEKTSLQVSAFPSEILPEFLYLGSYDNASRSELLKTQGISRVLNTVPACQNLYKNSFTYHCLQYDKTLPFDDAVEFLEQCERDKARVLVHCMSGKNRSPAIVIAFLMKCKGWRLAQSYQWVKERRPSVDLTEPVYQQLQEYEQKVFGSAENSLPTLPIFPPAGLPSFSFGFPKTGDPVPITPFNAIGTTSIFSRPTLDVPSHEFTFGAGQAQNSFSGSPFGTNPRNSTSSNIQMDSA 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8607533 8610037 - Lag0015201.1 Lac12g0829 589426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0829 272 ProSitePatterns Tyrosine specific protein phosphatases active site. 124 134 IPR016130 GO:0016311(InterPro)
Lac12g0829 272 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 47 181 IPR029021 -
Lac12g0829 272 SMART dsp_5 46 179 IPR020422 GO:0006470(InterPro)
Lac12g0829 272 PANTHER PROTEIN-TYROSINE-PHOSPHATASE IBR5 1 271 IPR044212 GO:0005634(PANTHER)|GO:0009734(InterPro)|GO:0009738(InterPro)|GO:0033549(InterPro)|GO:0033549(PANTHER)|GO:0043407(InterPro)
Lac12g0829 272 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 103 171 IPR000387 GO:0016311(InterPro)
Lac12g0829 272 ProSiteProfiles Dual specificity protein phosphatase domain profile. 46 182 IPR020422 GO:0006470(InterPro)
Lac12g0829 272 MobiDBLite consensus disorder prediction 243 272 - -
Lac12g0829 272 CDD DSP_plant_IBR5-like 47 176 - -
Lac12g0829 272 FunFam Protein-tyrosine-phosphatase IBR5 36 186 - -
Lac12g0829 272 Gene3D Protein tyrosine phosphatase superfamily 40 187 IPR029021 -
Lac12g0829 272 Pfam Dual specificity phosphatase, catalytic domain 55 179 IPR000340 GO:0016311(InterPro)
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0829 K04459 - csv:101211000 529.25