Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0842 ATGGCGGCCAAATCTGTATCTCAAAATTACATCGGAGCCAATTTCCATATCCTCTTTTCAATTCTACTCCTGCAGTTTGCGACCTTCGGATTGGCAGCCACAGCCAAGCTTCATCGAGACGAAGTGAAAGCGTTGAAAGAGATCGAAAAGAAGCTAGGGAAAAACGACTGGAATTTTACCCTAGATCCTTGCAGTGGAGAAGGAAATTGGCGCGTTGATAATGGAAGAAAAGGCTTCGAAAGCTCCGTCACATGCGATTGCTCTTTCAACCACAACTCCACTTGCCATATCGTCGCCATAGCACTGAAGTCCCAGAATCTATCTGGCATTGTGCCCCCAGAGTTTTCCAAGCTTCGCTTCCTCAAACAGCTAGACCTCAGTCGAAACTGTCTCACTGGTTCTATTCCTCCCCAATGGGCTACCATGCGATTGGTAGAACTCTCTTTCATGGGAAACAAATTGTCCGGTCCATTCCCGAAAGTTCTTACCAATATCACCACCCTCAGAAACCTGAGCATTGAAGGAAATCAATTTTCCGGTCGAATTCCACCTGAGGTCGGAAAACTAGTCAATTTGGAAAAATTTGTTTTGGAGTCAAATGGCTTCACCGGAGAATTGCCTAAAGCACTAGCGAAGCTGTCGAACTTAATTGATATGAGGATAAGTGACAATAACTTCTCTGGAAATATACCTGAGTTCATTAGTAATTGGACACAGGTTGAAAAACTGCATATACAAGGCTGCTCCCTCGAGGGGCCCATACCTTCAAGTATCTCCACCATGACAAGTTTAACTGATCTGAGAATATCTGACTTAAAAGGTGGGAGGTCTCCTTTTCCACCGTTGAGCAAATTGGAATCCATGAAGACGCTGATACTGAGGAAGTGCTTAATTGTTGGAGAAATCCCCAAATACATTGGGGACATGAAAAAATTGAAAAACTTAGACCTCAGCTACAATGACTTGACTGGGGAAGTTCCTGCATCTTTTGAACGACTGGAAAAGATAGATTACATATATTTGACAGGAAACAAGCTCGATGGAATTATTCCTGGTTGGGTTTTAGGAAGCAACAAGAATGTGGATCTTTCTAACAACAACTTCACCTGGGAAAGCTCAAGCCCAGCTGAGTGTCCTCGAGGGAGTGTAAATTTAGTAGAGACTTACTCACCGTCTGCAGAAAAATTAACTAGAGTCCATCCCTGCCTAAAAAGGAACTTCCCGTGTTCTGCACCAAAGGAACAGCATCACTACTCTTTGCACATTAACTGTGGCGGTAAAGAAGCATTTGTAAGGGGTGAAAGGTATGAAGCGGATAGAGAAGGGGCTTCAATGTTTTATACTGGTCAGAATTGGGCTTTTAGCAGCACGGGAAGCTTTATGGACAATGATGTTGATGCTGATAACTACATTATAACAAATACATCTGCTCTTTCAAATGTCTCTGTCACTGATTCAGAACTGTACACAAAAGCGAGAAATTCTCCTCAATCTCTTACATACTATGGGCTCTGTCTCATAAATGGGAATTATACCGTTAAACTCCACTTTGCAGAGATCGTATTTATAAATGACAGTTCATTCAATAGCCTTGGGAAGCGAATTTTTGATGTGTACGTACAGGAAAAGTTAGTCCTGAAAGATTTTGATATAGAAAATGAAGCAGGGGGTACAGGCAAGCCTGTTATAAAAACATTTACTGCAGAAGTCACAAGTCATACATTGAAGATCCATTTCTACTGGGCTGGAAGAGGAACAACAGGAATCCCTGTTAGAGGAAATTATGGTCCTCTGATATCAGCTATTTCCGTAGATCCGAATTTTACACCTCCTGAGTACCATGTGAAGAAGAATAACACCATCATAATTATTGGGACAACAGCAGCAGCTGTTGTTCTCTTTCTTCTGGTGTTATGTATTATGTGGAGGAAGGGATGGCTGGGAGGCAAGGCATCTGTATATAAAGAGCTTAGAGGTATAGACCTGCAAACAGGATTATTTACGATAAGACAGATCAAAGCCGCCACTAAAAATTTTGATTCTGCGAACAAAGTGGGGGAAGGTGGTTTTGGTGCAGTTTACAAGGGTCTCTTGTCAGATGGTACTATAATTGCAGTCAAGCAGCTGTCGTCAAAATCAAAGCAAGGAAATCGAGAATTTGTTAATGAAATAGGCATGATATCTGCATTGCAACACCCAAATCTTGTCAAGCTTTATGGATGTTGTGTTGAGGGGAACCAACTAATGTTGATTTATGAATACATGGAAAATAATTGCTTATCACGCGCTCTTTTTAGAAAAGACCCAGCATCTAAATTGAGATTGGATTGGCCCACCAGGCAGAAAATTTGTCTGGGAATAGCTAGAGGTTTGGCCTATCTGCATGAGGAGTCAAGATTAAAAATCGTACATAGGGATATCAAGACAAGTAATGTGTTGCTTGATAAGGATTTCAATGCTAAAATTTCTGATTTTGGTTTGGCTAAACTTTATGAAGATGACAATACCCATATCAGCACCCGAGTTGCTGGAACCATTGGTTATATGGCACCAGAATATGCAATGCGTGGATGCTTGACCAGCAAAGCTGATGTTTATAGCTTTGGAGTTGTTGCCCTGGAAATTGTCAGCGGCAAAAGCAATACCAACTACAGGCCTAAGGAGGATTTTGTTTACCTTCTTGATTGGGCATCTGTTCTGCAAGAAAAAGGAAGCTTATTGGAGTTGGTGGACCCAGCTTTGGGGTCAGATTATTCATCAGAAGAAGCAATGGTGATGCTGAATGTGGCTCTCCTCTGCACCAACGCATCCCCAACTCTGCGGCCTCTAATGTCCCAAGTGGTCAGCATGCTCGAAGGTCGAACTCCAGTGCAAGCACTTCTTTCTGATCCAGGATTTTCAGCCATTAATTCCAAACTGAAAGCTCTCAGAAATCACTTCTGGCAACAATTGAGCCCCACACGCAGTTTGTCATTGGACGACTTCCCAAGTGATTCCTTGAGTTCAAATGTTGAGGCAGAAGAGACTTACAATCTTGTAAGAGCCAATTCTGTTAAATCTGATACATGA 3069 42.1 MAAKSVSQNYIGANFHILFSILLLQFATFGLAATAKLHRDEVKALKEIEKKLGKNDWNFTLDPCSGEGNWRVDNGRKGFESSVTCDCSFNHNSTCHIVAIALKSQNLSGIVPPEFSKLRFLKQLDLSRNCLTGSIPPQWATMRLVELSFMGNKLSGPFPKVLTNITTLRNLSIEGNQFSGRIPPEVGKLVNLEKFVLESNGFTGELPKALAKLSNLIDMRISDNNFSGNIPEFISNWTQVEKLHIQGCSLEGPIPSSISTMTSLTDLRISDLKGGRSPFPPLSKLESMKTLILRKCLIVGEIPKYIGDMKKLKNLDLSYNDLTGEVPASFERLEKIDYIYLTGNKLDGIIPGWVLGSNKNVDLSNNNFTWESSSPAECPRGSVNLVETYSPSAEKLTRVHPCLKRNFPCSAPKEQHHYSLHINCGGKEAFVRGERYEADREGASMFYTGQNWAFSSTGSFMDNDVDADNYIITNTSALSNVSVTDSELYTKARNSPQSLTYYGLCLINGNYTVKLHFAEIVFINDSSFNSLGKRIFDVYVQEKLVLKDFDIENEAGGTGKPVIKTFTAEVTSHTLKIHFYWAGRGTTGIPVRGNYGPLISAISVDPNFTPPEYHVKKNNTIIIIGTTAAAVVLFLLVLCIMWRKGWLGGKASVYKELRGIDLQTGLFTIRQIKAATKNFDSANKVGEGGFGAVYKGLLSDGTIIAVKQLSSKSKQGNREFVNEIGMISALQHPNLVKLYGCCVEGNQLMLIYEYMENNCLSRALFRKDPASKLRLDWPTRQKICLGIARGLAYLHEESRLKIVHRDIKTSNVLLDKDFNAKISDFGLAKLYEDDNTHISTRVAGTIGYMAPEYAMRGCLTSKADVYSFGVVALEIVSGKSNTNYRPKEDFVYLLDWASVLQEKGSLLELVDPALGSDYSSEEAMVMLNVALLCTNASPTLRPLMSQVVSMLEGRTPVQALLSDPGFSAINSKLKALRNHFWQQLSPTRSLSLDDFPSDSLSSNVEAEETYNLVRANSVKSDT 1022
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8764084 8775867 + Lag0015214.1 Lac12g0842 589439
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0842 1022 FunFam probable LRR receptor-like serine/threonine-protein kinase At1g53430 648 754 - -
Lac12g0842 1022 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN DDB_G0281931-RELATED 27 966 IPR051824 -
Lac12g0842 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase 755 963 - -
Lac12g0842 1022 Pfam Protein tyrosine and serine/threonine kinase 682 896 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0842 1022 CDD STKc_IRAK 685 953 - -
Lac12g0842 1022 Gene3D Transferase(Phosphotransferase) domain 1 755 960 - -
Lac12g0842 1022 Gene3D - 420 606 - -
Lac12g0842 1022 Gene3D Phosphorylase Kinase; domain 1 650 754 - -
Lac12g0842 1022 ProSiteProfiles Protein kinase domain profile. 679 961 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0842 1022 Pfam Leucine rich repeat 287 346 IPR001611 GO:0005515(InterPro)
Lac12g0842 1022 SUPERFAMILY L domain-like 85 369 - -
Lac12g0842 1022 SMART serkin_6 679 949 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0842 1022 Gene3D Ribonuclease Inhibitor 40 166 IPR032675 -
Lac12g0842 1022 Gene3D Ribonuclease Inhibitor 167 233 IPR032675 -
Lac12g0842 1022 FunFam Putative LRR receptor-like serine/threonine-protein kinase isoform A 237 384 - -
Lac12g0842 1022 FunFam Putative leucine-rich repeat receptor-like serine/threonine-protein kinase 417 607 - -
Lac12g0842 1022 Gene3D Ribonuclease Inhibitor 234 419 IPR032675 -
Lac12g0842 1022 FunFam Probable LRR receptor-like serine/threonine-protein kinase RFK1 43 206 - -
Lac12g0842 1022 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524(InterPro)
Lac12g0842 1022 ProSitePatterns Serine/Threonine protein kinases active-site signature. 802 814 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0842 1022 SUPERFAMILY Protein kinase-like (PK-like) 664 952 IPR011009 -
Lac12g0842 1022 Pfam Malectin domain 419 602 IPR021720 -
Lac12g0842 1022 Pfam Leucine Rich Repeat 121 140 IPR001611 GO:0005515(InterPro)
Lac12g0842 1022 Pfam Leucine Rich Repeat 168 189 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0842 Lac-Chr12:8764084 Lac2g1158 Lac-Chr2:9264824 1.30E-228 dispersed
Lac5g1091 Lac-Chr5:18042631 Lac12g0842 Lac-Chr12:8764084 4.20E-12 dispersed
Lac10g0846 Lac-Chr10:6781326 Lac12g0842 Lac-Chr12:8764084 2.30E-87 transposed
Lac5g0497 Lac-Chr5:5604602 Lac12g0842 Lac-Chr12:8764084 2.50E-47 transposed
Lac5g2349 Lac-Chr5:42133937 Lac12g0842 Lac-Chr12:8764084 1.10E-90 transposed
Lac5g2388 Lac-Chr5:42607209 Lac12g0842 Lac-Chr12:8764084 2.20E-85 transposed
Lac5g2414 Lac-Chr5:42790269 Lac12g0842 Lac-Chr12:8764084 8.40E-220 transposed
Lac12g0842 Lac-Chr12:8764084 Lac6g1064 Lac-Chr6:9754287 2.00E-48 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85799 PF07714 PK_Tyr_Ser-Thr 1.10E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0842 - - - 0.0