Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g0854 | ATGGCTCAAGAATTTAGCTGCTTTTTGCTTTCATTATCGCTCTCCTTTTTAGATGCAATCTTAATAATGTCCACTTTTCTCTATAGAAGCAAAAATCTTCCACCTGGGCAAATGGGTTTCCCTTGGATTGGCGAAACATTGGATTTTTACAGAGCCCAACGAAGAAACAGACTGTTTGAGGATTTTGTTGGGCCTCGAGTGGCTAAGTTTGGCAAGATTTTCAAAACAAGCTTGATGGGGTCGCCCACAGTGGTTGTTAATGGAGCTGAAGCCAACAGATTTTTCTTGTCCAATGAGTTTAAGTTGGTTGTGAGCTCGTGGCCATCGGCCTCGGTTCAGCTGATGGGCGAAGAATGCATAATGCAGAAACAAGGTGAAAGCCATCGATGTGTGCGTGGGCTTATTGCTGCAAGCCTTGCTGGTTCGAGTCTTGAGGCTATGATGCCTAAGTTGTGTAGCACAATTCGGTCTCATTTGGACACCAACTGGCTTGGCTGTGACACTATTGGTTTGTTTCACTCGGCCAAAGTCTTGACGTTTACGATAGTGTTCGAGTGTTTGATGGGGATTGGAGTTGAGCCAGATGTGTTGAGGACATTTGAGAGAGTCCTGGAAGGAGTTTTTGCACCTCCGTTCAGGTTTCCGGGCTCAAAGTTTTCGAGAGCCAAGAAAGCACGGTTAGAGATAGAGAAAATGTTGAGGGAAGTGGTGAGAGAGAAGAGGAGGAGAATTGAAGGAAAGGTAAAAGAAGCAGAAGATGGATTATTGCTTTCAAGGATGGTGACAGCGATGATGAGAGGGGAAATTAGTGAAGTGGAAGTAATAGACAACGTGGTTTTGCTTGTTTTTGCAGCTCATGATACAACCTCGTTTGCCATTGCCATGACTTTCAAAATGTTGGCTCACCATTCAAATTGTTACTCACTTCTTCTCAAGGAACATGTTGACATAGCGAGAAGCAAGGAACCAGGTCAGAATTTGACAATGGAAGATATAAAGAAGATGAAGTATACTTGGCAAGTAGCTCGTGAGAGTATGCGACTGTTTCCCCCTATATTCGGTTCTTTCAGGAAAGCGATTTCGGACATCGACTATGAGGGCTTCTTCATTCCCAAAGGATGGAAGGTCTTATGGACGACGTATGGAACACACTACGAGGAAGAGTATTTTGAAGATCCATTGAGTTTCAAGCCAAGCAGATTTGAGGAACCTGTTTCCCAGTATGTATATGTACCATTTGGAGGAGGGCCAAGAGCTTGTGCAGGCTACCAGCTAGCCAAATTGAACATCCTCATCTTTATACACTTTGTTGTAACTCGTTATGATTGGAGTTTAGTCCACCCAGATGAGCCAATCATAATGGATCCTCTCCCTTTCCCTTCTCATGGAATGCCAATAAAGATATCTCCAAAATCAGAAGTTTGTCACAATGTACAGCAAATGTAA | 1446 | 43.5 | MAQEFSCFLLSLSLSFLDAILIMSTFLYRSKNLPPGQMGFPWIGETLDFYRAQRRNRLFEDFVGPRVAKFGKIFKTSLMGSPTVVVNGAEANRFFLSNEFKLVVSSWPSASVQLMGEECIMQKQGESHRCVRGLIAASLAGSSLEAMMPKLCSTIRSHLDTNWLGCDTIGLFHSAKVLTFTIVFECLMGIGVEPDVLRTFERVLEGVFAPPFRFPGSKFSRAKKARLEIEKMLREVVREKRRRIEGKVKEAEDGLLLSRMVTAMMRGEISEVEVIDNVVLLVFAAHDTTSFAIAMTFKMLAHHSNCYSLLLKEHVDIARSKEPGQNLTMEDIKKMKYTWQVARESMRLFPPIFGSFRKAISDIDYEGFFIPKGWKVLWTTYGTHYEEEYFEDPLSFKPSRFEEPVSQYVYVPFGGGPRACAGYQLAKLNILIFIHFVVTRYDWSLVHPDEPIIMDPLPFPSHGMPIKISPKSEVCHNVQQM | 481 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 8873183 | 8875011 | + | Lag0015226.1 | Lac12g0854 | 589451 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g0854 | 481 | PANTHER | CYTOCHROME P450 26 | 32 | 451 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Lac12g0854 | 481 | FunFam | Taxadiene 5-alpha hydroxylase | 25 | 471 | - | - | |
| Lac12g0854 | 481 | CDD | CYP90-like | 66 | 470 | - | - | |
| Lac12g0854 | 481 | Coils | Coil | 222 | 242 | - | - | |
| Lac12g0854 | 481 | Pfam | Cytochrome P450 | 34 | 457 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | E-class P450 group I signature | 379 | 403 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | E-class P450 group I signature | 420 | 443 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | E-class P450 group I signature | 67 | 86 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | E-class P450 group I signature | 273 | 290 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | E-class P450 group I signature | 410 | 420 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | P450 superfamily signature | 420 | 431 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | P450 superfamily signature | 340 | 351 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | P450 superfamily signature | 411 | 420 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | PRINTS | P450 superfamily signature | 284 | 301 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | SUPERFAMILY | Cytochrome P450 | 26 | 470 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g0854 | 481 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 413 | 422 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac12g0854 | 481 | Gene3D | Cytochrome P450 | 24 | 471 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g0854 | Lac-Chr12:8873183 | Lac2g1391 | Lac-Chr2:11751867 | 4.30E-86 | dispersed | |
| Lac12g0854 | Lac-Chr12:8873183 | Lac5g2065 | Lac-Chr5:39155217 | 2.80E-48 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g0854 | - | - | - | 0.0 |