Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0862 ATGAAACGTTTAAAAGTTCAAAGTCTCACCATTTCCAATTCTCATACAAAATTTGGATTCTCTTTGGCGGAGATTGCTGATTTCTCTGATCTCTGTTCCCCAAAATTCACAGTGCTCTTCCTGCAATTGGGTTTTGGGCATTCATCCTGTAGGAATGCAAAAAGTTTCTTTACTCGATCTGATTTTGGTTACTTTATGGTAGCTGGTGGTTTCGGTTGTTCTGGTTTGGCGATTGAGTTATTGGTTCAGGTTTTGGGATTGCAGATTTTGTATTCACTGTTTCTCGAAGCTGGGTTTGAGAGTTTAGGGAAATGCAGACTGATCACCAACTCTGCAGAATTGGACTTTTTCTCTGAATATGGCGATGCCAACAGATTCAAAATCCAGGAAGTTATTGGAAAGGGGAGTTATGGCGTGGTTTGTTCAGCTGTTGACACTCTCACTAATGAAAAAGTGGCAATAAAGAAGATTCATGATATTTTTGAACATGTTTCTGATGCTGCCCGTATTCTTCGTGAGATAAAGCTGCTCAGACTTCTACGTCATCCCGATATTGTTGAAATCAAACACATTATGTTACCACCTTCTCGTAGGGGGTTCAAAGATATCTTTGTTGTGTTTGAGTTGATGGAATCAGATTTGCATCAAGTCATCAAGGCCAATGATGATTTAACAAAAGAGCACTATCAATTTTTCCTTTACCAGCTACTCCGTGCACTGAAATATATTCACACAGCAAATGTCTACCATCGGGATTTAAAACCAAAGAATATATTGGCAAATGCAAATTGCAAACTCAAAATCTGTGATTTTGGATTGGCTAGAGTTGCTTTCAGTGACACCCCGACAACAATATTTTGGACGGACTATGTTGCTACCAGATGGTATAGGGCTCCAGAGCTATGTGGCTCTTTCTTCTCTAAGTATACTCCTGCCATTGACATTTGGAGCATTGGCTGCATATTTGCTGAAGTACTAACCGGAAAACCACTTTTTCCCGGTAAAAATGTTGTTCATCAGCTTGATTTGATGACAGATCTCCTTGGAACACCTTCATTAGATACCATTTCTCGGGTAAGAAACGAAAAGGCAAGGAGGTACTTAACTAGTATGAGGAAGAAGCAGCCCATACCCTTTTCACAGAAGTTCCCAAATGCAGATCCTCTAGCCCTTCAATTACTACAACGATTGCTTGCGTTTGATCCAAAGGATCGGCCTACTGCTGAAGAGGCATTGGCAGATCCTTACTTTAAGGGGCTGGCAAAAGTTGAGAGGGAACCTTCTTGCCAGCCAATCTCAAAGGTGGAGTTTGAATTTGAGAGGAGAAAGGTCACAAAGGACGACATTCGCGAGCTGATATTCCGTGAGATACTAGAATACCATCCTCAACTGCTGAAAGACTACTTAAATGGAACTGAGAGATCAAATTTTCTCTATCCAAGTGCACTCGATCAGTTCAAAAAACAATTTGCCCATCTTGAAGATAATGGAGGAAAAAGTGGACCAGTTTATCCTCTAGAAAGAAAGCATGCATCTCTTCCTAGGTCTTCAGTACAGTCAAATACCATTCCCCCTAAAGCAACATCAAATATCGTTTCCTTTAAAGACCGATATGCGCCTACAGGGTCGTACAGCAACCAGCATTACAGAGATCCAGCAGCACAGAGGATGGCTGCTGCTACTCAAGCCAAGCCTGGAAGAATTTCGGGCCCGGTCGTGCCATATGATAGTGGTAGCATCGGTAAAGATGCCTACGACCCAAGAATGTTAATCAGAAGTGCCCTCCCTTCTCATGCTATCCACCCAACATATTATTTCCGCCAATCTTGCGGCCAAAATGAAGAAAGATCAGCAACAACAGGGGCTGAGCAAGACACTTCCTTGCAATGCAAACAAGCCCCTCAATGTGGAATGGCAGCCAAATTAGCAGCAGATACAGCAGCCACTGGTGCTTTCTCAAATCCCTTTTTTATGGCGCGTGTAGGGGTGCACAAGGCAGGAACCAATGACCGTGCTGCACGTTTGCAGGTAAACGCTCAATATGATGCTGGAGCCATTGCTGCTGCCACTGCCACTGCCACCACCCATAGAAACACTAGCGCAGTCGAGTATGGTATTACAAGAATGTATTAG 2133 42.9 MKRLKVQSLTISNSHTKFGFSLAEIADFSDLCSPKFTVLFLQLGFGHSSCRNAKSFFTRSDFGYFMVAGGFGCSGLAIELLVQVLGLQILYSLFLEAGFESLGKCRLITNSAELDFFSEYGDANRFKIQEVIGKGSYGVVCSAVDTLTNEKVAIKKIHDIFEHVSDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRGFKDIFVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANANCKLKICDFGLARVAFSDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSLDTISRVRNEKARRYLTSMRKKQPIPFSQKFPNADPLALQLLQRLLAFDPKDRPTAEEALADPYFKGLAKVEREPSCQPISKVEFEFERRKVTKDDIRELIFREILEYHPQLLKDYLNGTERSNFLYPSALDQFKKQFAHLEDNGGKSGPVYPLERKHASLPRSSVQSNTIPPKATSNIVSFKDRYAPTGSYSNQHYRDPAAQRMAAATQAKPGRISGPVVPYDSGSIGKDAYDPRMLIRSALPSHAIHPTYYFRQSCGQNEERSATTGAEQDTSLQCKQAPQCGMAAKLAADTAATGAFSNPFFMARVGVHKAGTNDRAARLQVNAQYDAGAIAAATATATTHRNTSAVEYGITRMY 710
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 8924073 8929492 - Lag0015234.1 Lac12g0862 589459
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0862 710 FunFam Mitogen-activated protein kinase 117 219 - -
Lac12g0862 710 ProSitePatterns Protein kinases ATP-binding region signature. 132 156 IPR017441 GO:0005524(InterPro)
Lac12g0862 710 ProSiteProfiles Protein kinase domain profile. 126 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0862 710 CDD STKc_TDY_MAPK 125 462 - -
Lac12g0862 710 Pfam Protein kinase domain 127 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0862 710 Gene3D Phosphorylase Kinase; domain 1 141 463 - -
Lac12g0862 710 ProSitePatterns MAP kinase signature. 161 264 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0862 710 SUPERFAMILY Protein kinase-like (PK-like) 123 421 IPR011009 -
Lac12g0862 710 Gene3D Transferase(Phosphotransferase) domain 1 212 440 - -
Lac12g0862 710 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 124 458 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lac12g0862 710 SMART serkin_6 126 417 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0862 710 FunFam Mitogen-activated protein kinase 212 440 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0862 Lac-Chr12:8924073 Lac12g2338 Lac-Chr12:40554997 1.20E-206 dispersed
Lac5g2385 Lac-Chr5:42576233 Lac12g0862 Lac-Chr12:8924073 7.60E-207 transposed
Lac12g0862 Lac-Chr12:8924073 Lac9g2254 Lac-Chr9:41888913 1.60E-249 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85800 PF00069 Pkinase 1.60E-66 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0862 - - - 0.0