Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0876 ATGTCGAATGATGAAGGGAAAAAGAATCTGTATCAGCAGTACGATCCATTTCAGTACAATCAGCTGGATATGAACCGTTCGATCTTCCAGCAAGAGGCGTTGGATCCAGCTTTCATGAGCTTCACCAACTTCTTCGACACGTCGTTGGACTACAACAGCCTGTCGAGGGCTTTCGACGTGTCGTGCTCTTCATCGGAAGTGATTTCGGCGGTGGACGACATGTCGAAAATCAAGAAGGCGGCGGCTTCAGGTGGAGGGAAAAGTAGTTGTTTAAACAACAATAACCAATCGTCGACGCCAAATTCTTCAGTGTCGTCTTCGTCGAATGAGGCTGTAGCTGAAGAAGATTCAGTCAAGAGCAACAAAGACGACACCAAAGGAAGCCAGAATAATAAAGATGAAGAAAAGTCCTCTAAGAAACAGAACATAGCAAAAAAGAATAAAGAGAAACGGCCGAGGGAGCCCCGCTTTGCTTTCTTGACTAAGAGCGAGATTGATCACCTTGAAGATGGATATAGATGGAGAAAATATGGACAGAAGGCAGTAAAAAACAGTCCTTACCCCAGAAGTTACTATAGATGCACGAGTCAAAAATGTTTAGTGAAAAAACGAGTAGAAAGATCATACCAAGATCCATCTGTGGTGATAACTACATACGAAGGCCAACACAACCACCATTGCCCAGCTACACTCCGAGGCCATTCTGCAGCAGGAATGATGTCGTCGCCCTTTTACGCATCGGCATCGACATCGGTAACGGCAGCCTCCTCCGGGCCTACCCTCCCCCAAGAACTCTTCTCCCATCTGCTACCGATCACCAACTGCCCGACTGACTCCGCGTCGATCATGTACCAAAATCTAAACCTCCAACAACACCTTCAATTGCCTGATCATTATGGTTTGTTGCAAGATTTGTTCACTCAAAAATAG 930 45.91 MSNDEGKKNLYQQYDPFQYNQLDMNRSIFQQEALDPAFMSFTNFFDTSLDYNSLSRAFDVSCSSSEVISAVDDMSKIKKAAASGGGKSSCLNNNNQSSTPNSSVSSSSNEAVAEEDSVKSNKDDTKGSQNNKDEEKSSKKQNIAKKNKEKRPREPRFAFLTKSEIDHLEDGYRWRKYGQKAVKNSPYPRSYYRCTSQKCLVKKRVERSYQDPSVVITTYEGQHNHHCPATLRGHSAAGMMSSPFYASASTSVTAASSGPTLPQELFSHLLPITNCPTDSASIMYQNLNLQQHLQLPDHYGLLQDLFTQK 309
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9081101 9083038 + Lag0015248.1 Lac12g0876 589473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0876 309 MobiDBLite consensus disorder prediction 115 158 - -
Lac12g0876 309 FunFam WRKY transcription factor 57 154 228 - -
Lac12g0876 309 Pfam WRKY DNA -binding domain 169 226 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0876 309 MobiDBLite consensus disorder prediction 86 114 - -
Lac12g0876 309 MobiDBLite consensus disorder prediction 82 158 - -
Lac12g0876 309 ProSiteProfiles WRKY domain profile. 163 228 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0876 309 SUPERFAMILY WRKY DNA-binding domain 161 228 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0876 309 SMART WRKY_cls 168 227 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0876 309 Gene3D WRKY domain 153 229 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Lac12g0876 309 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 75 249 IPR044810 GO:0003700(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0876 Lac-Chr12:9081101 Lac1g3492 Lac-Chr1:54217786 3.00E-40 dispersed
Lac6g0787 Lac-Chr6:6741464 Lac12g0876 Lac-Chr12:9081101 1.30E-35 transposed
Lac12g0876 Lac-Chr12:9081101 Lac8g0090 Lac-Chr8:1267928 2.10E-25 wgd
Lac12g0876 Lac-Chr12:9081101 Lac9g2256 Lac-Chr9:41926862 1.30E-46 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23050 PF03106 WRKY 2.70E-25 CL0274 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0876 - - - 0.0