Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0877 ATGTCATCTGGAAGTACTTTGAATACAGAATTGTCAAAGAAAACACCTTTCCTTGGCTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTCGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGACAACTTCTCTATTTCTCAAATACCAAATATCTCAAAGGATATTAAGGTGGACAGAATAGCGACTCAATCTGCTCACCACAATCATCTCGAGAGTCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGACCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCACGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAGGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATATCATATGGAGGGTATGGAGGACTTGTGACAGCCTCTCCTCTTGTTGGCTTGCCTGAAATTTCACATCTCGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCTCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAATCTTGTCCGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCCATGCGCCAACATGGCACTCTTACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTTGCATATTTACATGAAGCAATTGAACCGAAGGTTGTCCACAGAGACATAAAATCAAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGACTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGTTACGTGGCACCCGAATATGCCAACACCGGCTTGTTAAATGAAAAGAGTGACATTTACAGCTTTGGCGTTCTCCTTCTAGAAGCAATTACAGGAAGGGACCCTGTGGACTATGGCCGTCCTGCTAATGAGGTTAATCTTGTAGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCCGAGGAAGTTATAGACCCGAATCTTGAAACTAAACCCTCTACACGGGCGTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACTCAAGTTGTTAGAATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGGAGGAGTCAAAAGAGCAGCGCAGCAAACTCGGAGGTCGAATCCACGAAAGAGATCTCCAGTCAAGCCGAGGTCGGAAGTAAACCAGGGGAATCACAAAGCAGACCTGCAAACGCGTGA 1539 44.12 MSSGSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPDNFSISQIPNISKDIKVDRIATQSAHHNHLESLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSISYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPNLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSAANSEVESTKEISSQAEVGSKPGESQSRPANA 512
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9089906 9092931 - Lag0015249.1 Lac12g0877 589474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0877 512 Gene3D Transferase(Phosphotransferase) domain 1 268 482 - -
Lac12g0877 512 Pfam Protein kinase domain 195 461 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0877 512 ProSitePatterns Protein kinases ATP-binding region signature. 198 221 IPR017441 GO:0005524(InterPro)
Lac12g0877 512 MobiDBLite consensus disorder prediction 481 512 - -
Lac12g0877 512 PANTHER OS01G0323000 PROTEIN 6 491 IPR052232 -
Lac12g0877 512 Gene3D Phosphorylase Kinase; domain 1 174 267 - -
Lac12g0877 512 ProSiteProfiles Protein kinase domain profile. 192 450 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0877 512 MobiDBLite consensus disorder prediction 462 512 - -
Lac12g0877 512 Coils Coil 212 232 - -
Lac12g0877 512 SUPERFAMILY Protein kinase-like (PK-like) 176 469 IPR011009 -
Lac12g0877 512 SMART serkin_6 192 463 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g0877 512 FunFam Putative receptor-like serine/threonine-protein kinase 268 478 - -
Lac12g0877 512 CDD STKc_IRAK 198 464 - -
Lac12g0877 512 MobiDBLite consensus disorder prediction 462 480 - -
Lac12g0877 512 ProSitePatterns Serine/Threonine protein kinases active-site signature. 314 326 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g0877 512 FunFam Putative receptor-like protein kinase 174 267 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0877 Lac-Chr12:9089906 Lac6g0288 Lac-Chr6:2359709 6.60E-141 dispersed
Lac6g0024 Lac-Chr6:243839 Lac12g0877 Lac-Chr12:9089906 5.60E-16 dispersed
Lac8g2195 Lac-Chr8:40251030 Lac12g0877 Lac-Chr12:9089906 2.50E-63 dispersed
Lac10g0630 Lac-Chr10:4845071 Lac12g0877 Lac-Chr12:9089906 4.10E-52 transposed
Lac4g2329 Lac-Chr4:42999112 Lac12g0877 Lac-Chr12:9089906 6.40E-66 transposed
Lac6g2506 Lac-Chr6:42865381 Lac12g0877 Lac-Chr12:9089906 2.40E-155 transposed
Lac12g0877 Lac-Chr12:9089906 Lac3g1761 Lac-Chr3:18102033 6.00E-49 wgd
Lac12g0877 Lac-Chr12:9089906 Lac4g1197 Lac-Chr4:29278191 6.10E-47 wgd
Lac12g0877 Lac-Chr12:9089906 Lac7g1601 Lac-Chr7:18798082 1.30E-66 wgd
Lac12g0877 Lac-Chr12:9089906 Lac9g2257 Lac-Chr9:41932067 5.60E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85801 PF00069 Pkinase 4.50E-48 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0877 - - - 0.0