Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0877 | ATGTCATCTGGAAGTACTTTGAATACAGAATTGTCAAAGAAAACACCTTTCCTTGGCTTGTCCCTATGGGTTTTGATCTGCTTATGTGTTGGTGCATTTATTGTTTTGATTCTCGGTATCTTATCTGTATGGGTGATGTTTCGAAGAAAAACAAGGAGATCCCCAGACAACTTCTCTATTTCTCAAATACCAAATATCTCAAAGGATATTAAGGTGGACAGAATAGCGACTCAATCTGCTCACCACAATCATCTCGAGAGTCTTTATCTTTCCATTCATGATAAATCAAGTGAGAAGAACTCAGAGAAGATGATTGGTCATTTGGGTATGAGCAAGTCAAGTGACCCTGATAACATAAGCCAATGCAGCTCCAATTATCATCACGAAAGGGTTTTTAGCTCACATTCAGGAGAAGAGGGAAGCTCTGGGACTGTTAGAAAGCAGTCTTCCATATCATATGGAGGGTATGGAGGACTTGTGACAGCCTCTCCTCTTGTTGGCTTGCCTGAAATTTCACATCTCGGTTGGGGTCATTGGTTTACACTCAGGGATCTAGAATTTGCGACAAATCGTTTCTCTGCAGACAATGTGCTTGGTGAAGGGGGTTATGGGGTTGTCTATAAAGGCAGACTGATAAATGGAACTGAGGTTGCAGTGAAGAAACTTCTCAATAATCTGGGACAAGCAGAGAAAGAATTTAGAGTTGAAGTGGAGGCCATTGGTCATGTAAGACACAAGAATCTTGTCCGGCTCCTCGGCTATTGCATAGAAGGAGTTCATAGGATGCTGGTCTATGAATATGTGAACAATGGCAACTTAGAACAATGGTTACATGGGGCCATGCGCCAACATGGCACTCTTACTTGGGAGGCCCGAATGAAGGTGCTTCTTGGCACTGCCAAGGCGCTTGCATATTTACATGAAGCAATTGAACCGAAGGTTGTCCACAGAGACATAAAATCAAGCAACATCTTAATCGATGATGAATTTAATGCAAAGGTTTCAGACTTTGGATTGGCCAAACTTTTGGATGCAGGAGAGAGTCACATCACGACTAGAGTGATGGGAACATTTGGTTACGTGGCACCCGAATATGCCAACACCGGCTTGTTAAATGAAAAGAGTGACATTTACAGCTTTGGCGTTCTCCTTCTAGAAGCAATTACAGGAAGGGACCCTGTGGACTATGGCCGTCCTGCTAATGAGGTTAATCTTGTAGAGTGGTTAAAAGTGATGGTAGGCACAAGGAGAGCCGAGGAAGTTATAGACCCGAATCTTGAAACTAAACCCTCTACACGGGCGTTGAAACGTGCCCTTCTGATTGCACTTAGGTGTGTGGATCCTGAGGCAGATAAGAGACCAAAAATGACTCAAGTTGTTAGAATGCTTGAAGCTGATGACTACCCATCACGTGAGGATCGGAGGAGTCAAAAGAGCAGCGCAGCAAACTCGGAGGTCGAATCCACGAAAGAGATCTCCAGTCAAGCCGAGGTCGGAAGTAAACCAGGGGAATCACAAAGCAGACCTGCAAACGCGTGA | 1539 | 44.12 | MSSGSTLNTELSKKTPFLGLSLWVLICLCVGAFIVLILGILSVWVMFRRKTRRSPDNFSISQIPNISKDIKVDRIATQSAHHNHLESLYLSIHDKSSEKNSEKMIGHLGMSKSSDPDNISQCSSNYHHERVFSSHSGEEGSSGTVRKQSSISYGGYGGLVTASPLVGLPEISHLGWGHWFTLRDLEFATNRFSADNVLGEGGYGVVYKGRLINGTEVAVKKLLNNLGQAEKEFRVEVEAIGHVRHKNLVRLLGYCIEGVHRMLVYEYVNNGNLEQWLHGAMRQHGTLTWEARMKVLLGTAKALAYLHEAIEPKVVHRDIKSSNILIDDEFNAKVSDFGLAKLLDAGESHITTRVMGTFGYVAPEYANTGLLNEKSDIYSFGVLLLEAITGRDPVDYGRPANEVNLVEWLKVMVGTRRAEEVIDPNLETKPSTRALKRALLIALRCVDPEADKRPKMTQVVRMLEADDYPSREDRRSQKSSAANSEVESTKEISSQAEVGSKPGESQSRPANA | 512 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9089906 | 9092931 | - | Lag0015249.1 | Lac12g0877 | 589474 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0877 | 512 | Gene3D | Transferase(Phosphotransferase) domain 1 | 268 | 482 | - | - | |
Lac12g0877 | 512 | Pfam | Protein kinase domain | 195 | 461 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g0877 | 512 | ProSitePatterns | Protein kinases ATP-binding region signature. | 198 | 221 | IPR017441 | GO:0005524(InterPro) | |
Lac12g0877 | 512 | MobiDBLite | consensus disorder prediction | 481 | 512 | - | - | |
Lac12g0877 | 512 | PANTHER | OS01G0323000 PROTEIN | 6 | 491 | IPR052232 | - | |
Lac12g0877 | 512 | Gene3D | Phosphorylase Kinase; domain 1 | 174 | 267 | - | - | |
Lac12g0877 | 512 | ProSiteProfiles | Protein kinase domain profile. | 192 | 450 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g0877 | 512 | MobiDBLite | consensus disorder prediction | 462 | 512 | - | - | |
Lac12g0877 | 512 | Coils | Coil | 212 | 232 | - | - | |
Lac12g0877 | 512 | SUPERFAMILY | Protein kinase-like (PK-like) | 176 | 469 | IPR011009 | - | |
Lac12g0877 | 512 | SMART | serkin_6 | 192 | 463 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g0877 | 512 | FunFam | Putative receptor-like serine/threonine-protein kinase | 268 | 478 | - | - | |
Lac12g0877 | 512 | CDD | STKc_IRAK | 198 | 464 | - | - | |
Lac12g0877 | 512 | MobiDBLite | consensus disorder prediction | 462 | 480 | - | - | |
Lac12g0877 | 512 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 314 | 326 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac12g0877 | 512 | FunFam | Putative receptor-like protein kinase | 174 | 267 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0877 | Lac-Chr12:9089906 | Lac6g0288 | Lac-Chr6:2359709 | 6.60E-141 | dispersed | |
Lac6g0024 | Lac-Chr6:243839 | Lac12g0877 | Lac-Chr12:9089906 | 5.60E-16 | dispersed | |
Lac8g2195 | Lac-Chr8:40251030 | Lac12g0877 | Lac-Chr12:9089906 | 2.50E-63 | dispersed | |
Lac10g0630 | Lac-Chr10:4845071 | Lac12g0877 | Lac-Chr12:9089906 | 4.10E-52 | transposed | |
Lac4g2329 | Lac-Chr4:42999112 | Lac12g0877 | Lac-Chr12:9089906 | 6.40E-66 | transposed | |
Lac6g2506 | Lac-Chr6:42865381 | Lac12g0877 | Lac-Chr12:9089906 | 2.40E-155 | transposed | |
Lac12g0877 | Lac-Chr12:9089906 | Lac3g1761 | Lac-Chr3:18102033 | 6.00E-49 | wgd | |
Lac12g0877 | Lac-Chr12:9089906 | Lac4g1197 | Lac-Chr4:29278191 | 6.10E-47 | wgd | |
Lac12g0877 | Lac-Chr12:9089906 | Lac7g1601 | Lac-Chr7:18798082 | 1.30E-66 | wgd | |
Lac12g0877 | Lac-Chr12:9089906 | Lac9g2257 | Lac-Chr9:41932067 | 5.60E-225 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85801 | PF00069 | Pkinase | 4.50E-48 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0877 | - | - | - | 0.0 |