Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0891 ATGGCGACGGAGATGATGATGAATGGGAGCTGCAAAAAGGGAGGTGGAGCTCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGCGCTCAGGACTGCGTTTTTGCGCCTTATTTTCCTGCTGATCAGCCTCACAAATTCTCCAGTGTTCACAAGGTCTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTACCTGAGCATCAACGGAGCGACGCAGTGAGCTCGATGGTATACGAGGCAAACGCGAGGATTCGAGATCCGGTTTACGGGTGTGTGGGAACAATATCATGTCTACAAAGGCAAGTGGATGCGCTACAAGAGCAACTGGCAATGACACAGGCCCAGCTGCTTCACTTGAAAATAGGCCAATTTTCTTCAACATTGCAATCATCATTATCTACTGAGAATAATGTCCATTCTCCGCCCAATATCAATGTGGGCACATCCACATCCACATCCACATCCTTGTGGTCTTGCTAG 492 49.8 MATEMMMNGSCKKGGGAPSPCAACKLLRRRCAQDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQEQLAMTQAQLLHLKIGQFSSTLQSSLSTENNVHSPPNINVGTSTSTSTSLWSC 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9335793 9337966 + Lag0015263.1 Lac12g0891 589488

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0891 163 Coils Coil 99 119 - -
Lac12g0891 163 Pfam Lateral organ boundaries (LOB) domain 20 117 IPR004883 -
Lac12g0891 163 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Lac12g0891 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 133 - -
Lac12g0891 163 MobiDBLite consensus disorder prediction 137 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0891 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0891 Lac-Chr12:9335793 Lac13g1175 Lac-Chr13:10408470 1.70E-42 dispersed
Lac5g2899 Lac-Chr5:47162336 Lac12g0891 Lac-Chr12:9335793 9.00E-30 transposed
Lac12g0891 Lac-Chr12:9335793 Lac9g2273 Lac-Chr9:42086121 7.60E-51 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g1042 . . . . . . . . . . . . . . Sed05g1854 Cpe04g00856 . Bhi05g02025 Tan02g0063 Cmetu01g1532 Lac12g0891 Hepe02g0029 . . Cla02g01814 Cam02g1919 Cec02g1940 Cco02g1984 Clacu02g1901 Cmu02g1848 Cre02g2163 . . . . . Csa07g01185 . . Blo15g00606 . . . . . . . Sed01g0750 . . . . . . . . Bhi10g00963 Tan05g0608 Cmetu11g1961 . Hepe08g0630 . . . . . . . . . . Csa06g01169 Chy11g01024 Cme01g01534
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac6g2155 . 16 238 AS2 family AT1G65620 66.7 7.4e-72 267.7
Lac9g0565 . 2 110 AS2 family AT1G65620 83.5 2.6e-48 189.5
Lac3g0157 . 3 113 AS2 family AT1G65620 74.8 5.9e-45 178.3
Lac9g0563 . 2 110 AS2 family AT1G65620 78.0 1.7e-44 176.8
Lac8g0240 . 3 174 AS2 family AT1G65620 51.1 1.1e-43 174.1
Lac8g2566 . 1 117 AS2 family AT1G65620 69.2 1.6e-42 170.2
Lac10g0481 . 1 120 AS2 family AT1G65620 69.2 8.8e-41 164.5
Lac9g0565 . 1 128 AS2 family AT5G66870 78.7 2.0e-55 213.8
Lac9g0563 . 1 136 AS2 family AT5G66870 77.9 4.4e-55 212.6
Lac6g2155 . 19 127 AS2 family AT5G66870 77.1 1.3e-43 174.5
Lac3g0157 . 1 113 AS2 family AT5G66870 69.0 1.2e-39 161.4
Lac8g0240 . 7 113 AS2 family AT5G66870 68.2 4.4e-39 159.5
Lac8g2566 . 1 115 AS2 family AT5G66870 64.3 1.3e-38 157.9
Lac10g0481 . 16 120 AS2 family AT5G66870 69.5 1.9e-37 154.1
Lac8g2875 . 9 115 AS2 family AT5G66870 65.4 1.2e-36 151.4
Lac1g3558 . 17 122 AS2 family AT5G66870 61.3 2.1e-36 150.6
Lac9g2362 . 1 122 AS2 family AT5G66870 54.9 2.7e-36 150.2
Lac9g0565 . 4 118 AS2 family AT2G23660 69.6 2.7e-44 176.8
Lac9g0563 . 6 118 AS2 family AT2G23660 69.0 1.1e-42 171.4
Lac6g2155 . 21 127 AS2 family AT2G23660 69.2 1.2e-39 161.4
Lac3g0157 . 8 113 AS2 family AT2G23660 65.1 9.8e-39 158.3
Lac8g0240 . 7 123 AS2 family AT2G23660 58.1 3.2e-37 153.3
Lac9g2362 . 5 118 AS2 family AT2G23660 55.3 2.0e-36 150.6
Lac8g2566 . 4 114 AS2 family AT3G27650 86.5 1.2e-53 206.8
Lac8g0240 . 4 114 AS2 family AT3G27650 84.7 3.0e-52 202.2
Lac3g0157 . 4 114 AS2 family AT3G27650 79.3 1.0e-47 187.2
Lac10g0481 . 16 121 AS2 family AT3G27650 74.5 3.7e-42 168.7
Lac6g2155 . 18 127 AS2 family AT3G27650 67.3 5.4e-41 164.9
Lac9g0565 . 4 112 AS2 family AT3G27650 67.0 1.0e-39 160.6
Lac9g0563 . 6 112 AS2 family AT3G27650 64.5 1.1e-36 150.6
Lac3g0157 . 3 113 AS2 family AT5G63090 94.6 2.2e-57 219.5
Lac8g2566 . 1 138 AS2 family AT5G63090 74.1 7.9e-52 201.1
Lac8g0240 . 2 123 AS2 family AT5G63090 79.5 1.0e-51 200.7
Lac10g0481 . 1 120 AS2 family AT5G63090 78.3 2.2e-49 193.0
Lac6g2155 . 16 137 AS2 family AT5G63090 70.2 9.4e-45 177.6
Lac9g0565 . 2 110 AS2 family AT5G63090 70.6 1.4e-40 163.7
Lac10g1284 . 11 122 AS2 family AT5G63090 66.1 5.9e-39 158.3
Lac9g2273 . 12 115 AS2 family AT5G63090 68.3 2.2e-38 156.4
Lac12g0891 . 19 122 AS2 family AT5G63090 67.3 6.5e-38 154.8
Lac13g1175 . 4 106 AS2 family AT5G63090 69.9 1.9e-37 153.3
Lac9g0563 . 6 110 AS2 family AT5G63090 67.6 5.5e-37 151.8
Lac13g1175 . 3 114 AS2 family AT2G30130 92.0 3.9e-54 208.8
Lac9g2362 . 2 115 AS2 family AT2G30130 79.8 1.1e-48 190.7
Lac9g2273 . 12 123 AS2 family AT2G30130 75.0 3.3e-45 179.1
Lac10g1284 . 9 126 AS2 family AT2G30130 68.6 2.2e-44 176.4
Lac12g0891 . 14 134 AS2 family AT2G30130 71.1 4.8e-44 175.3
Lac3g0157 . 8 111 AS2 family AT2G30130 68.3 2.0e-37 153.3
Lac6g2155 . 22 124 AS2 family AT2G30130 67.0 1.3e-36 150.6
Lac8g2852 . 46 148 AS2 family AT2G30130 68.9 1.3e-36 150.6
Lac8g0240 . 8 111 AS2 family AT2G30130 65.4 1.7e-36 150.2
Lac10g1284 . 1 167 AS2 family AT1G31320 76.5 4.3e-68 255.0
Lac9g2273 . 1 168 AS2 family AT1G31320 74.0 1.3e-64 243.4
Lac12g0891 . 16 163 AS2 family AT1G31320 56.7 4.9e-48 188.3
Lac13g1175 . 2 122 AS2 family AT1G31320 68.3 4.3e-44 175.3
Lac9g2362 . 6 122 AS2 family AT1G31320 63.2 1.1e-39 160.6
Lac8g2852 . 46 155 AS2 family AT1G31320 63.6 1.1e-36 150.6
Lac3g0157 . 9 120 AS2 family AT1G31320 62.5 1.5e-36 150.2
Lac13g0890 . 53 144 AS2 family AT2G28500 88.0 5.4e-42 168.7
Lac7g2532 . 35 127 AS2 family AT2G28500 82.8 3.5e-41 166.0
Lac9g2556 . 33 124 AS2 family AT2G28500 84.8 1.0e-40 164.5
Lac9g2362 . 6 114 AS2 family AT2G28500 64.2 3.6e-38 156.0
Lac7g2531 . 12 103 AS2 family AT2G28500 76.1 6.2e-38 155.2
Lac9g2273 . 11 120 AS2 family AT2G28500 66.4 1.2e-36 151.0
Lac13g1175 . 5 113 AS2 family AT2G28500 66.1 1.2e-36 151.0
Lac12g0891 . 19 133 AS2 family AT2G28500 66.1 2.0e-36 150.2
Lac9g2556 . 33 194 AS2 family AT1G07900 66.9 2.1e-44 176.4
Lac13g0890 . 53 207 AS2 family AT1G07900 68.8 1.1e-43 174.1
Lac7g2532 . 22 153 AS2 family AT1G07900 75.8 1.1e-43 174.1
Lac7g2531 . 12 128 AS2 family AT1G07900 76.1 2.7e-39 159.5
Lac9g2273 . 1 168 AS2 family AT1G16530 58.1 3.1e-47 185.7
Lac10g1284 . 10 167 AS2 family AT1G16530 54.7 1.9e-41 166.4
Lac12g0891 . 15 163 AS2 family AT1G16530 54.1 3.3e-41 165.6
Lac13g1175 . 5 110 AS2 family AT1G16530 68.2 3.7e-37 152.1
Lac8g2852 . 31 155 AS2 family AT2G30340 80.8 1.2e-56 217.6
Lac13g1221 . 14 166 AS2 family AT2G30340 68.8 2.7e-53 206.5
Lac9g2273 . 9 120 AS2 family AT2G30340 60.7 1.8e-36 150.6
Lac8g2852 . 28 161 AS2 family AT2G40470 82.6 2.5e-59 226.1
Lac13g1221 . 36 187 AS2 family AT2G40470 74.7 5.1e-57 218.4
Lac9g2273 . 9 120 AS2 family AT2G40470 66.1 1.5e-40 163.7
Lac10g1284 . 12 122 AS2 family AT2G40470 65.8 6.3e-39 158.3
Lac12g0891 . 19 132 AS2 family AT2G40470 64.0 2.4e-38 156.4
Lac9g2362 . 6 123 AS2 family AT2G40470 57.6 1.3e-36 150.6
Lac8g2875 . 1 122 AS2 family AT3G11090 79.5 1.4e-47 186.8
Lac11g2626 . 1 145 AS2 family AT2G42440 66.9 6.3e-49 191.8
Lac4g1874 . 7 146 AS2 family AT2G42440 62.9 2.0e-42 170.2
Lac11g2627 . 16 126 AS2 family AT2G42440 66.7 1.3e-38 157.5
Lac12g1883 . 25 134 AS2 family AT2G42440 65.2 3.2e-37 152.9
Lac11g2626 . 4 117 AS2 family AT3G58190 83.3 2.7e-51 199.5
Lac4g1874 . 4 141 AS2 family AT3G58190 69.0 2.8e-48 189.5
Lac11g2627 . 14 126 AS2 family AT3G58190 69.9 3.0e-42 169.5
Lac12g1883 . 25 123 AS2 family AT3G58190 74.7 6.2e-40 161.8
Lac7g2139 . 40 157 AS2 family AT3G58190 62.7 2.2e-37 153.3
Lac13g1006 . 6 115 AS2 family AT3G58190 66.4 4.9e-37 152.1
Lac7g0319 . 19 130 AS2 family AT3G58190 64.3 8.4e-37 151.4
Lac11g2626 . 1 145 AS2 family AT2G31310 57.5 4.4e-42 168.7
Lac11g2627 . 14 227 AS2 family AT2G42430 54.5 4.5e-55 212.2
Lac11g2626 . 3 109 AS2 family AT2G42430 73.8 2.2e-41 166.8
Lac12g1883 . 25 127 AS2 family AT2G42430 74.8 1.4e-40 164.1
Lac7g2139 . 39 155 AS2 family AT2G42430 64.1 5.0e-38 155.6
Lac7g0319 . 6 121 AS2 family AT2G42430 64.7 1.1e-37 154.5
Lac4g1874 . 12 114 AS2 family AT2G42430 70.9 2.5e-37 153.3
Lac12g1883 . 25 239 AS2 family AT4G00220 57.8 1.5e-57 220.3
Lac7g0319 . 19 207 AS2 family AT4G00220 52.1 8.0e-46 181.4
Lac12g1886 . 14 196 AS2 family AT4G00220 53.2 2.1e-38 156.8
Lac12g1883 . 25 239 AS2 family AT2G45420 69.2 3.3e-72 269.2
Lac7g0319 . 19 191 AS2 family AT2G45420 56.0 1.6e-50 197.2
Lac11g2627 . 20 122 AS2 family AT2G45420 77.7 8.0e-42 168.3
Lac7g2139 . 40 146 AS2 family AT2G45420 74.8 2.3e-41 166.8
Lac4g1874 . 12 118 AS2 family AT2G45420 70.1 1.5e-40 164.1
Lac12g1886 . 14 103 AS2 family AT2G45420 82.2 4.4e-40 162.5
Lac11g2626 . 7 109 AS2 family AT2G45420 72.8 5.7e-40 162.2
Lac7g2139 . 40 153 AS2 family AT3G03760 86.8 1.3e-50 197.6
Lac12g1883 . 25 126 AS2 family AT3G03760 81.4 1.6e-40 164.1
Lac7g0319 . 13 125 AS2 family AT3G03760 68.1 5.6e-38 155.6
Lac11g2626 . 2 111 AS2 family AT3G03760 69.1 9.5e-38 154.8
Lac11g2627 . 16 133 AS2 family AT3G03760 66.1 1.2e-37 154.5
Lac12g1883 . 25 135 AS2 family AT4G00210 73.0 1.6e-43 173.7
Lac7g0319 . 18 152 AS2 family AT4G00210 58.1 2.4e-39 159.8
Lac11g2626 . 2 107 AS2 family AT4G00210 67.9 2.0e-38 156.8
Lac4g1874 . 12 116 AS2 family AT4G00210 66.7 5.9e-38 155.2
Lac7g2139 . 40 141 AS2 family AT4G00210 72.5 3.8e-37 152.5
Lac11g2627 . 14 122 AS2 family AT4G00210 63.3 1.1e-36 151.0
Lac12g1886 . 1 210 AS2 family AT2G45410 51.0 3.0e-46 182.6
Lac7g0319 . 12 137 AS2 family AT2G45410 63.8 6.2e-44 174.9
Lac11g2626 . 3 102 AS2 family AT2G45410 68.0 3.3e-37 152.5
Lac13g1006 . 8 120 AS2 family AT5G06080 73.5 1.5e-44 176.8
Lac4g2988 . 27 135 AS2 family AT3G13850 74.3 9.7e-43 171.4
Lac3g0479 . 1 165 AS2 family AT1G68510 60.5 1.1e-53 207.6
Lac11g0176 . 51 203 AS2 family AT1G68510 64.0 4.0e-53 205.7
Lac13g0499 . 1 132 AS2 family AT1G68510 65.4 1.5e-47 187.2
Lac1g2647 . 1 104 AS2 family AT1G68510 62.5 1.6e-38 157.1
Lac3g0479 . 1 134 AS2 family AT1G67100 75.7 3.4e-60 229.2
Lac13g0499 . 1 129 AS2 family AT1G67100 66.4 1.0e-48 191.0
Lac1g2647 . 1 110 AS2 family AT1G67100 66.4 7.6e-44 174.9
Lac11g0176 . 51 341 AS2 family AT3G02550 54.4 2.3e-73 273.1
Lac3g0479 . 1 161 AS2 family AT3G02550 70.7 8.3e-63 238.0
Lac13g0499 . 1 138 AS2 family AT3G02550 64.3 2.6e-48 189.9
Lac1g2647 . 1 104 AS2 family AT3G02550 68.3 2.2e-39 160.2
Lac1g2647 . 1 203 AS2 family AT5G67420 64.2 3.5e-71 265.8
Lac2g0382 . 1 118 AS2 family AT5G67420 61.4 5.0e-41 165.6
Lac3g0479 . 3 112 AS2 family AT5G67420 61.8 4.2e-40 162.5
Lac11g0176 . 51 153 AS2 family AT5G67420 64.1 7.9e-39 158.3
Lac13g0499 . 1 104 AS2 family AT5G67420 64.4 1.3e-38 157.5
Lac1g2647 . 1 207 AS2 family AT3G49940 62.5 5.5e-69 258.5
Lac2g0382 . 1 118 AS2 family AT3G49940 64.1 5.8e-42 168.7
Lac11g0176 . 51 198 AS2 family AT3G49940 52.0 1.4e-40 164.1
Lac3g0479 . 3 112 AS2 family AT3G49940 62.7 3.2e-40 162.9
Lac13g0499 . 1 104 AS2 family AT3G49940 66.3 1.0e-38 157.9
Lac1g2647 . 1 240 AS2 family AT4G37540 54.1 9.5e-66 247.7
Lac3g0479 . 3 113 AS2 family AT4G37540 64.0 2.4e-40 163.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000955 1 3 2 2 2 3 4 3 3 3 3 3 3 4 3 3 3 2 3 3 3 2 3 3 3 3 3 3 3 2 84
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23052 PF03195 LOB 1.80E-43 No_clan Lac TF