Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0891 ATGGCGACGGAGATGATGATGAATGGGAGCTGCAAAAAGGGAGGTGGAGCTCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGCGCTCAGGACTGCGTTTTTGCGCCTTATTTTCCTGCTGATCAGCCTCACAAATTCTCCAGTGTTCACAAGGTCTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTACCTGAGCATCAACGGAGCGACGCAGTGAGCTCGATGGTATACGAGGCAAACGCGAGGATTCGAGATCCGGTTTACGGGTGTGTGGGAACAATATCATGTCTACAAAGGCAAGTGGATGCGCTACAAGAGCAACTGGCAATGACACAGGCCCAGCTGCTTCACTTGAAAATAGGCCAATTTTCTTCAACATTGCAATCATCATTATCTACTGAGAATAATGTCCATTCTCCGCCCAATATCAATGTGGGCACATCCACATCCACATCCACATCCTTGTGGTCTTGCTAG 492 49.8 MATEMMMNGSCKKGGGAPSPCAACKLLRRRCAQDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQEQLAMTQAQLLHLKIGQFSSTLQSSLSTENNVHSPPNINVGTSTSTSTSLWSC 163
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 9335793 9337966 + Lag0015263.1 Lac12g0891 589488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0891 163 Coils Coil 99 119 - -
Lac12g0891 163 Pfam Lateral organ boundaries (LOB) domain 20 117 IPR004883 -
Lac12g0891 163 ProSiteProfiles LOB domain profile. 19 120 IPR004883 -
Lac12g0891 163 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 19 133 - -
Lac12g0891 163 MobiDBLite consensus disorder prediction 137 158 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0891 Lac-Chr12:9335793 Lac13g1175 Lac-Chr13:10408470 1.70E-42 dispersed
Lac5g2899 Lac-Chr5:47162336 Lac12g0891 Lac-Chr12:9335793 9.00E-30 transposed
Lac12g0891 Lac-Chr12:9335793 Lac9g2273 Lac-Chr9:42086121 7.60E-51 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23052 PF03195 LOB 1.80E-43 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0891 - - - 0.0