Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0891 | ATGGCGACGGAGATGATGATGAATGGGAGCTGCAAAAAGGGAGGTGGAGCTCCATCGCCTTGCGCTGCGTGCAAGCTTCTGCGGCGGCGGTGCGCTCAGGACTGCGTTTTTGCGCCTTATTTTCCTGCTGATCAGCCTCACAAATTCTCCAGTGTTCACAAGGTCTTTGGAGCTAGTAATGTCAGCAAATTGTTGCAGGAGTTACCTGAGCATCAACGGAGCGACGCAGTGAGCTCGATGGTATACGAGGCAAACGCGAGGATTCGAGATCCGGTTTACGGGTGTGTGGGAACAATATCATGTCTACAAAGGCAAGTGGATGCGCTACAAGAGCAACTGGCAATGACACAGGCCCAGCTGCTTCACTTGAAAATAGGCCAATTTTCTTCAACATTGCAATCATCATTATCTACTGAGAATAATGTCCATTCTCCGCCCAATATCAATGTGGGCACATCCACATCCACATCCACATCCTTGTGGTCTTGCTAG | 492 | 49.8 | MATEMMMNGSCKKGGGAPSPCAACKLLRRRCAQDCVFAPYFPADQPHKFSSVHKVFGASNVSKLLQELPEHQRSDAVSSMVYEANARIRDPVYGCVGTISCLQRQVDALQEQLAMTQAQLLHLKIGQFSSTLQSSLSTENNVHSPPNINVGTSTSTSTSLWSC | 163 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 9335793 | 9337966 | + | Lag0015263.1 | Lac12g0891 | 589488 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0891 | 163 | Coils | Coil | 99 | 119 | - | - | |
Lac12g0891 | 163 | Pfam | Lateral organ boundaries (LOB) domain | 20 | 117 | IPR004883 | - | |
Lac12g0891 | 163 | ProSiteProfiles | LOB domain profile. | 19 | 120 | IPR004883 | - | |
Lac12g0891 | 163 | PANTHER | LOB DOMAIN-CONTAINING PROTEIN 4-RELATED | 19 | 133 | - | - | |
Lac12g0891 | 163 | MobiDBLite | consensus disorder prediction | 137 | 158 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g0891 | Lac-Chr12:9335793 | Lac13g1175 | Lac-Chr13:10408470 | 1.70E-42 | dispersed | |
Lac5g2899 | Lac-Chr5:47162336 | Lac12g0891 | Lac-Chr12:9335793 | 9.00E-30 | transposed | |
Lac12g0891 | Lac-Chr12:9335793 | Lac9g2273 | Lac-Chr9:42086121 | 7.60E-51 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23052 | PF03195 | LOB | 1.80E-43 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0891 | - | - | - | 0.0 |