Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0956 ATGCTTCTAGGGTTTTTAGGAATTCAGAGGCGTTTCGGGACGAACCAAGTGGAACCGGGGCGGCCAGAGGCAGCAGGGACCGAACGACCGAGGTCGACAACTTGGCCCGACCCTTTGGCCTGGTCTTCCTCTGGGTCGATTTCCTGGTCCTGTCTCTGTCCGATTGTCCTCGTCACCTCCTTGTGCAGAGTGGCGGAGAGGTTTTATTGTTGTGCGAAAATGGAGTTGGATGGCATCGAAGGCGTGCCATCCATGGATGTGATGGACGAGGAGGATAAGACCCTTCAACGTCACTGTCAGTTTCCTTCGATTTCCAAGCCTCGAATCATCAATAACGACAATCCCACCACCACAAGTGTCCACGAGCTTCTTGAATGTCCCGTTTGCACCAATTCTATGTATCCTCCGATTCATCAGTGTCCCAATGGACACACCCTCTGTTCTTCATGTAAAACAAGGGTTGACAACCGTTGCCCGACATGCAGACAAGAGCTCGGCGACATCAGATGTCTAGCATTAGAAAAAATCGCTGAATCACTTAAACTGGCTTGTAAATTCTGCACATTCGGGTGCCCTGAGATATTGCCTTACTACAGTAAACTCAAACACGAATCTGCTTGTTACTTTAGACCATATACCTGCCCTTATGCTGGATCAGACTGCCCAGTTGATGGAGACATTCCTTTCCTTGTTTCTCATCTTCGGGATGATCACAAAGTCGACATGCATTCTGGATGCACGTTTAATCATCGTTACGTAAAGGCTAATCCATGTGAAGTTGAAAACGCTACATGGATGCTAACTGTCTTCCACTGTTTTGGCCAGTATTTCTGTCTTCATTTTGAAGCCTTTCAGCTGGGAATGGCACCGGTTTACATGGCATTTCTCCGATTCATGGGTGACGAAACAGACGCCCGTAACTACAGTTACAGCCTCGAGGTCGGTGGAAATGGCAGGAAGCTCATATGGGAGGGCAACCCTCGAAGCATTCGGGACAACCACAAGAAGGTCAGAGACAGCCACGACGGGCTCATTATACAGAGAAACATGGCACTCTTCTTTTCGGGGGAGAACGGAAAGAGCTGA 1086 48.99 MLLGFLGIQRRFGTNQVEPGRPEAAGTERPRSTTWPDPLAWSSSGSISWSCLCPIVLVTSLCRVAERFYCCAKMELDGIEGVPSMDVMDEEDKTLQRHCQFPSISKPRIINNDNPTTTSVHELLECPVCTNSMYPPIHQCPNGHTLCSSCKTRVDNRCPTCRQELGDIRCLALEKIAESLKLACKFCTFGCPEILPYYSKLKHESACYFRPYTCPYAGSDCPVDGDIPFLVSHLRDDHKVDMHSGCTFNHRYVKANPCEVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDETDARNYSYSLEVGGNGRKLIWEGNPRSIRDNHKKVRDSHDGLIIQRNMALFFSGENGKS 361
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10487448 10491382 + Lag0015328.1 Lac12g0956 589553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0956 361 CDD RING-HC_SIAHs 124 162 - -
Lac12g0956 361 FunFam E3 ubiquitin-protein ligase SINAT3 176 234 - -
Lac12g0956 361 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 107 357 IPR052088 GO:0005737(PANTHER)|GO:0061630(PANTHER)
Lac12g0956 361 Pfam Sina, zinc finger 175 250 - -
Lac12g0956 361 FunFam E3 ubiquitin-protein ligase SINAT5-like 235 361 - -
Lac12g0956 361 CDD Sina 240 360 - -
Lac12g0956 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 120 168 IPR013083 -
Lac12g0956 361 Pfam E3 ubiquitin-protein ligase sina/sinah, RING finger 126 161 IPR049548 -
Lac12g0956 361 SUPERFAMILY TRAF domain-like 179 357 - -
Lac12g0956 361 ProSiteProfiles Zinc finger RING-type profile. 126 162 IPR001841 -
Lac12g0956 361 ProSiteProfiles Zinc finger SIAH-type profile. 179 239 IPR013010 GO:0008270(InterPro)
Lac12g0956 361 SUPERFAMILY RING/U-box 120 166 - -
Lac12g0956 361 Pfam Sina, TRAF-like domain 270 357 IPR018121 GO:0005737(InterPro)|GO:0006511(InterPro)|GO:0007275(InterPro)
Lac12g0956 361 MobiDBLite consensus disorder prediction 15 35 - -
Lac12g0956 361 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 236 361 IPR008974 GO:0005515(InterPro)
Lac12g0956 361 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 234 IPR013083 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g0956 Lac-Chr12:10487448 Lac5g3042 Lac-Chr5:48312599 5.90E-136 dispersed
Lac13g0746 Lac-Chr13:5823561 Lac12g0956 Lac-Chr12:10487448 3.40E-120 transposed
Lac1g0992 Lac-Chr1:26037858 Lac12g0956 Lac-Chr12:10487448 1.00E-117 transposed
Lac8g2069 Lac-Chr8:39178006 Lac12g0956 Lac-Chr12:10487448 1.40E-119 transposed
Lac9g2895 Lac-Chr9:46835838 Lac12g0956 Lac-Chr12:10487448 7.90E-113 transposed
Lac12g0956 Lac-Chr12:10487448 Lac13g1692 Lac-Chr13:18820513 5.20E-07 wgd
Lac12g0956 Lac-Chr12:10487448 Lac3g2228 Lac-Chr3:29710872 3.90E-07 wgd
Lac12g0956 Lac-Chr12:10487448 Lac8g1376 Lac-Chr8:30209806 5.20E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0956 K04506 - csv:101209363 598.586