Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g0970 | ATGACGCTTTACGAACAGAATCCGGAGGAGTCTCGCAAAGGTTTGGAAGGTCAGGATCTGTATGAGGAACTGTGGAAGGCATGTGCAGGGCCTCTTGTTGAAGTTCCTGTCAATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGGAAGAGTCAACAAATCAGGAGCTGAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTCTGTCGTGTCGTTAACATTCGTTTGTTGGCTGAAAAGGAAACAGATGAAGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCGCAAAGCCCTGATCCAGAGCCGCCTGTGCGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGCTTCTCAGTTCTTAGAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGGAGGCATTTGCTAACCACAGGGTGGAGTACGTTTGTTACATCGAAACGGCTGGTTGCTGGCGATGCATTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTCGGTGTTCGGCGGCAGGCTCGGCAGCAGTGTATGATGCCTTCCTCTGTTATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACGCAGACCTATTTTGTTGTGTATTACAAGCCAAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAAACAGTTAAAAATGGATTTGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCCCCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGAGATATATCTTCGCAATGGTCGGATTCTAAATGGCGATCGCTGAAGATTCAATGGGACGAACCTGCTACGATTCAGAGGCCAGAACGAGTTTCTCCATGGGAGATCGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATGAAGAGTAAGAGGGCCCGACCCGCTGAGATTCCTCCTACCGAAATTACTCCCAGTTCGGCTCCTTCGAGCTTTTGGATTCACGGATCGACAACTACTCACGAGATAAGTGGTGCAAATGAAGTTCAAAGCAGTGATAACCAGGTTGTCTGGGCTCTTGGGCAGCGAAAACTCGATAGCAATGTTGATAGCAGCAATAGCAGCCACTGTAATCCAATAGCACATGTTGAAGGCATTTGGCCTTCTCCTCCACTCCTTAATTTTTCCCTGAAGCTCTACCCAGATTCAACATGTGAAAGAGAACTTGTTCCTAAACAGCCTCTTCCCTCTCCTTACTCTCCATCTGTTACTTCAAAGTCTAGCAGCGACCTCATTCAGTATGATCAATTGGAGAAAGGGAATAAGACCGACATTTCTCTCGGCTGCCGAATATTTGGAATCAATTTGAAAAACAACTCTAGCATTGTCTCTTCCTTGGAGAAAAAACCGTGTTGCACAACTACGGTAGCTGATGGTGCCAAAGATTCAGTAGCTGCAGCTGCTACAACATCTCAAGTCGATGCTGGAAACCTGTCACAGCCTTCAAAGGAGCAGACACAACCACAAGTCGCATCGGAGCTGTCGACGAAAGGAACGCAGACAAAGCATGTTTCCAATCTATCATCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTAGGTCGAGCGGTCGACTTGACAACACTTGAAGGGTACGAAGATCTGATAGACGAACTGGAGAATGTGTTTGAAATAAAAGGACAACTTCGCGAAATGAACAAATGGGCTGTTGTTTTCACAGACGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGTGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGCAATAAAAGCAAGCTTGTTTCCCCATCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACTGAATCTTAA | 2097 | 45.54 | MTLYEQNPEESRKGLEGQDLYEELWKACAGPLVEVPVNGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPVRTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQCMMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGFEVGMRFKMRFEGEESPERRFTGTIVGVGDISSQWSDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAMKSKRARPAEIPPTEITPSSAPSSFWIHGSTTTHEISGANEVQSSDNQVVWALGQRKLDSNVDSSNSSHCNPIAHVEGIWPSPPLLNFSLKLYPDSTCERELVPKQPLPSPYSPSVTSKSSSDLIQYDQLEKGNKTDISLGCRIFGINLKNNSSIVSSLEKKPCCTTTVADGAKDSVAAAATTSQVDAGNLSQPSKEQTQPQVASELSTKGTQTKHVSNLSSRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGQLREMNKWAVVFTDDENDMMLVGDDPWPEFCKMVKRIFIYSSEEVKKMSNKSKLVSPSSLDSLDSERKTES | 698 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 10923180 | 10926668 | - | Lag0015342.1 | Lac12g0970 | 589567 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g0970 | 698 | Gene3D | - | 287 | 358 | - | - | |
Lac12g0970 | 698 | MobiDBLite | consensus disorder prediction | 99 | 118 | - | - | |
Lac12g0970 | 698 | CDD | B3_DNA | 123 | 225 | IPR003340 | GO:0003677(InterPro) | |
Lac12g0970 | 698 | Gene3D | - | 584 | 676 | - | - | |
Lac12g0970 | 698 | MobiDBLite | consensus disorder prediction | 550 | 588 | - | - | |
Lac12g0970 | 698 | SUPERFAMILY | DNA-binding pseudobarrel domain | 118 | 254 | IPR015300 | - | |
Lac12g0970 | 698 | FunFam | Auxin response factor | 583 | 676 | - | - | |
Lac12g0970 | 698 | PANTHER | AUXIN RESPONSE FACTOR 4-RELATED | 19 | 678 | IPR044835 | GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac12g0970 | 698 | Gene3D | - | 122 | 227 | IPR015300 | - | |
Lac12g0970 | 698 | Pfam | Auxin response factor | 251 | 330 | IPR010525 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro) | |
Lac12g0970 | 698 | Pfam | B3 DNA binding domain | 125 | 226 | IPR003340 | GO:0003677(InterPro) | |
Lac12g0970 | 698 | Pfam | AUX/IAA family | 578 | 624 | IPR033389 | - | |
Lac12g0970 | 698 | Pfam | AUX/IAA family | 633 | 673 | IPR033389 | - | |
Lac12g0970 | 698 | ProSiteProfiles | PB1 domain profile. | 588 | 680 | IPR053793 | - | |
Lac12g0970 | 698 | ProSiteProfiles | B3 DNA-binding domain profile. | 125 | 227 | IPR003340 | GO:0003677(InterPro) | |
Lac12g0970 | 698 | MobiDBLite | consensus disorder prediction | 674 | 698 | - | - | |
Lac12g0970 | 698 | MobiDBLite | consensus disorder prediction | 467 | 486 | - | - | |
Lac12g0970 | 698 | FunFam | Auxin response factor | 123 | 227 | - | - | |
Lac12g0970 | 698 | FunFam | Auxin response factor | 286 | 357 | - | - | |
Lac12g0970 | 698 | SMART | B3_2 | 125 | 227 | IPR003340 | GO:0003677(InterPro) | |
Lac12g0970 | 698 | SUPERFAMILY | CAD & PB1 domains | 583 | 664 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g1970 | Lac-Chr11:35217293 | Lac12g0970 | Lac-Chr12:10923180 | 1.00E-200 | dispersed | |
Lac12g0970 | Lac-Chr12:10923180 | Lac13g2278 | Lac-Chr13:35947543 | 3.10E-173 | dispersed | |
Lac12g0970 | Lac-Chr12:10923180 | Lac5g2249 | Lac-Chr5:41182364 | 1.60E-206 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23055 | PF02309 | AUX_IAA | 4.60E-11 | CL0072 | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g0970 | K14486 | - | csv:101205805 | 1199.11 |