Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g0970 ATGACGCTTTACGAACAGAATCCGGAGGAGTCTCGCAAAGGTTTGGAAGGTCAGGATCTGTATGAGGAACTGTGGAAGGCATGTGCAGGGCCTCTTGTTGAAGTTCCTGTCAATGGAGAAAGGGTTTTTTACTTCCCTCAGGGTCACATGGAACAATTGGAAGAGTCAACAAATCAGGAGCTGAATCACCAAATCCCTCATTTTGATCTCCCTCCCAAGATCCTCTGTCGTGTCGTTAACATTCGTTTGTTGGCTGAAAAGGAAACAGATGAAGTCTATGCTCAAATCACTTTATACCCAGAAGCTGATCAAAGTGAGCCGCAAAGCCCTGATCCAGAGCCGCCTGTGCGTACAAGGCAAACTGTTCATTCTTTTTGTAAGATTTTGACTGCTTCTGATACTAGCACTCATGGAGGCTTCTCAGTTCTTAGAAAACATGCCACTGAATGCCTTCCTCCCCTTGATATGAGTCAATCCACCCCAACTCAGGAGCTAGCTGCCAAGGATCTTCATGGGTATGAGTGGAAATTTAAGCATATTTTCAGAGGTCAACCACGGAGGCATTTGCTAACCACAGGGTGGAGTACGTTTGTTACATCGAAACGGCTGGTTGCTGGCGATGCATTTGTTTTCTTAAGGGGTGACAATGGGGAACTGAGGGTCGGTGTTCGGCGGCAGGCTCGGCAGCAGTGTATGATGCCTTCCTCTGTTATATCTAGCCATAGTATGCATCTTGGAGTTCTTGCCACTGCTTCTCATGCTGTTCGTACGCAGACCTATTTTGTTGTGTATTACAAGCCAAGAACTAGCCAATTCATCATCAGCTTAAACAAATACTTGGAAACAGTTAAAAATGGATTTGAAGTGGGGATGCGCTTCAAGATGAGATTTGAAGGAGAGGAATCCCCAGAGAGAAGGTTCACTGGAACTATTGTTGGTGTTGGAGATATATCTTCGCAATGGTCGGATTCTAAATGGCGATCGCTGAAGATTCAATGGGACGAACCTGCTACGATTCAGAGGCCAGAACGAGTTTCTCCATGGGAGATCGAACCCTTTGTACCTTCTGCCTCCTTAAACTTCACTCATCCTGCCATGAAGAGTAAGAGGGCCCGACCCGCTGAGATTCCTCCTACCGAAATTACTCCCAGTTCGGCTCCTTCGAGCTTTTGGATTCACGGATCGACAACTACTCACGAGATAAGTGGTGCAAATGAAGTTCAAAGCAGTGATAACCAGGTTGTCTGGGCTCTTGGGCAGCGAAAACTCGATAGCAATGTTGATAGCAGCAATAGCAGCCACTGTAATCCAATAGCACATGTTGAAGGCATTTGGCCTTCTCCTCCACTCCTTAATTTTTCCCTGAAGCTCTACCCAGATTCAACATGTGAAAGAGAACTTGTTCCTAAACAGCCTCTTCCCTCTCCTTACTCTCCATCTGTTACTTCAAAGTCTAGCAGCGACCTCATTCAGTATGATCAATTGGAGAAAGGGAATAAGACCGACATTTCTCTCGGCTGCCGAATATTTGGAATCAATTTGAAAAACAACTCTAGCATTGTCTCTTCCTTGGAGAAAAAACCGTGTTGCACAACTACGGTAGCTGATGGTGCCAAAGATTCAGTAGCTGCAGCTGCTACAACATCTCAAGTCGATGCTGGAAACCTGTCACAGCCTTCAAAGGAGCAGACACAACCACAAGTCGCATCGGAGCTGTCGACGAAAGGAACGCAGACAAAGCATGTTTCCAATCTATCATCGAGAACACGTACAAAGGTACAAATGCAAGGAGTTGCTGTAGGTCGAGCGGTCGACTTGACAACACTTGAAGGGTACGAAGATCTGATAGACGAACTGGAGAATGTGTTTGAAATAAAAGGACAACTTCGCGAAATGAACAAATGGGCTGTTGTTTTCACAGACGACGAAAACGACATGATGCTTGTGGGGGACGATCCATGGCCGGAGTTCTGTAAGATGGTGAAGAGGATCTTTATATATTCAAGTGAAGAAGTGAAGAAGATGAGCAATAAAAGCAAGCTTGTTTCCCCATCATCCTTAGATAGCTTGGATTCAGAGCGCAAGACTGAATCTTAA 2097 45.54 MTLYEQNPEESRKGLEGQDLYEELWKACAGPLVEVPVNGERVFYFPQGHMEQLEESTNQELNHQIPHFDLPPKILCRVVNIRLLAEKETDEVYAQITLYPEADQSEPQSPDPEPPVRTRQTVHSFCKILTASDTSTHGGFSVLRKHATECLPPLDMSQSTPTQELAAKDLHGYEWKFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDAFVFLRGDNGELRVGVRRQARQQCMMPSSVISSHSMHLGVLATASHAVRTQTYFVVYYKPRTSQFIISLNKYLETVKNGFEVGMRFKMRFEGEESPERRFTGTIVGVGDISSQWSDSKWRSLKIQWDEPATIQRPERVSPWEIEPFVPSASLNFTHPAMKSKRARPAEIPPTEITPSSAPSSFWIHGSTTTHEISGANEVQSSDNQVVWALGQRKLDSNVDSSNSSHCNPIAHVEGIWPSPPLLNFSLKLYPDSTCERELVPKQPLPSPYSPSVTSKSSSDLIQYDQLEKGNKTDISLGCRIFGINLKNNSSIVSSLEKKPCCTTTVADGAKDSVAAAATTSQVDAGNLSQPSKEQTQPQVASELSTKGTQTKHVSNLSSRTRTKVQMQGVAVGRAVDLTTLEGYEDLIDELENVFEIKGQLREMNKWAVVFTDDENDMMLVGDDPWPEFCKMVKRIFIYSSEEVKKMSNKSKLVSPSSLDSLDSERKTES 698
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 10923180 10926668 - Lag0015342.1 Lac12g0970 589567
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g0970 698 Gene3D - 287 358 - -
Lac12g0970 698 MobiDBLite consensus disorder prediction 99 118 - -
Lac12g0970 698 CDD B3_DNA 123 225 IPR003340 GO:0003677(InterPro)
Lac12g0970 698 Gene3D - 584 676 - -
Lac12g0970 698 MobiDBLite consensus disorder prediction 550 588 - -
Lac12g0970 698 SUPERFAMILY DNA-binding pseudobarrel domain 118 254 IPR015300 -
Lac12g0970 698 FunFam Auxin response factor 583 676 - -
Lac12g0970 698 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 19 678 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac12g0970 698 Gene3D - 122 227 IPR015300 -
Lac12g0970 698 Pfam Auxin response factor 251 330 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Lac12g0970 698 Pfam B3 DNA binding domain 125 226 IPR003340 GO:0003677(InterPro)
Lac12g0970 698 Pfam AUX/IAA family 578 624 IPR033389 -
Lac12g0970 698 Pfam AUX/IAA family 633 673 IPR033389 -
Lac12g0970 698 ProSiteProfiles PB1 domain profile. 588 680 IPR053793 -
Lac12g0970 698 ProSiteProfiles B3 DNA-binding domain profile. 125 227 IPR003340 GO:0003677(InterPro)
Lac12g0970 698 MobiDBLite consensus disorder prediction 674 698 - -
Lac12g0970 698 MobiDBLite consensus disorder prediction 467 486 - -
Lac12g0970 698 FunFam Auxin response factor 123 227 - -
Lac12g0970 698 FunFam Auxin response factor 286 357 - -
Lac12g0970 698 SMART B3_2 125 227 IPR003340 GO:0003677(InterPro)
Lac12g0970 698 SUPERFAMILY CAD & PB1 domains 583 664 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1970 Lac-Chr11:35217293 Lac12g0970 Lac-Chr12:10923180 1.00E-200 dispersed
Lac12g0970 Lac-Chr12:10923180 Lac13g2278 Lac-Chr13:35947543 3.10E-173 dispersed
Lac12g0970 Lac-Chr12:10923180 Lac5g2249 Lac-Chr5:41182364 1.60E-206 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23055 PF02309 AUX_IAA 4.60E-11 CL0072 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g0970 K14486 - csv:101205805 1199.11