Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1100 ATGACCACAAACTCCCACCATTCTCACCCCACCACCACCACCACCTCCTCCTCCGCCTCTTCTTCCTCCGTCTCTTCGGGTGGAAACACCCGAAAGAGGCAGAGGAGCGGCCCAACAAGCAGCACCGAGAGCGAGAGCGAATCGACTCACTCGGTAACGACCAAGTATCGAGGGGTTCGCCTTAGGGCATGGGGCAAATGGGTGTCCGAAATAAGAGAGCCAAGAAAGAAGTCTAGGATATGGCTAGGCACATATCCGACCGCCGAGATGGCGGCGCGTGCACACGACGTCGCTGCGCTTGCCATCAAAGGGCGTGGCGCGTTCCTCAACTTCCCCGAAATCAAACACCAACTCCCCCGTCCCGTGTCCCTCTCCGCCAAGGACATCCAGGCGGCCGCCGCACAGGCTGCCGCCGTGGAAGTACCAATGGCGGAGCGGGACGAGGAGTTGAGCCAATCCGAAACGACGACGACGACGTCGTCGTCGGTGGAAGAGACATGGTTTGATTTACCGGATCTTGTGGTAGAAGGGAGCGATGGGTTGTTGTTGGGTTATGATTATTCTTCATGTTGTTCATCGCCATGGCAGTTTGGTGAAGATCAGGAGCTCCAATGGCACTGGGATTATTCTCATACTATTTTTCCTGGTTGA 651 56.37 MTTNSHHSHPTTTTTSSSASSSSVSSGGNTRKRQRSGPTSSTESESESTHSVTTKYRGVRLRAWGKWVSEIREPRKKSRIWLGTYPTAEMAARAHDVAALAIKGRGAFLNFPEIKHQLPRPVSLSAKDIQAAAAQAAAVEVPMAERDEELSQSETTTTTSSSVEETWFDLPDLVVEGSDGLLLGYDYSSCCSSPWQFGEDQELQWHWDYSHTIFPG 216
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 13768080 13768730 + Lag0015472.1 Lac12g1100 589697
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1100 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 40 163 IPR051032 -
Lac12g1100 216 Gene3D AP2/ERF domain 54 114 IPR036955 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g1100 216 PRINTS Ethylene responsive element binding protein signature 78 94 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g1100 216 PRINTS Ethylene responsive element binding protein signature 56 67 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g1100 216 SMART rav1_2 55 118 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g1100 216 MobiDBLite consensus disorder prediction 1 54 - -
Lac12g1100 216 Pfam AP2 domain 54 104 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g1100 216 SUPERFAMILY DNA-binding domain 55 112 IPR016177 GO:0003677(InterPro)
Lac12g1100 216 CDD AP2 54 113 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g1100 216 ProSiteProfiles AP2/ERF domain profile. 55 112 IPR001471 GO:0003700(InterPro)|GO:0006355(InterPro)
Lac12g1100 216 FunFam Ethylene-responsive transcription factor 2 54 113 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1100 Lac-Chr12:13768080 Lac2g0847 Lac-Chr2:6702233 5.60E-33 dispersed
Lac2g2958 Lac-Chr2:47005522 Lac12g1100 Lac-Chr12:13768080 1.10E-23 transposed
Lac7g0080 Lac-Chr7:698132 Lac12g1100 Lac-Chr12:13768080 3.10E-34 transposed
Lac11g1296 Lac-Chr11:19597654 Lac12g1100 Lac-Chr12:13768080 7.90E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23057 PF00847 AP2 1.90E-14 CL0081 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1100 - - - 0.0