Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1184 ATGGAATTTCTCACAAAATCAAAGGAAGAAGTAGAAGAAGATCAAGAGGAGGAAGAAGAGGAAGAAATCCCCACTCTTGCATGCGATTTCTTCTCAAATTCGCACTCTCATCACAACCTTCAACAACAGCACCAGCACCAGCACCAGCACCAATGGCTTGAAGAGAGTCCAAATCATCAGTTCCAAAATCAGCAGCCTGTGATGGACTTATCCCTGAGAATGGACAGCAACAACGGCAGTGACAGCAATAATAATAATAATAATAATGGGTTTGCGGCGGTGGAGAGAGAGCACATGTTCGACAAAGTGGTCACCCCAAGCGATGTGGGAAAATTGAACCGTTTAGTCATCCCAAAGCAACACGCAGAGAAATACTTCCCCTTGGACTCCACCACCAACGACAAGGGCCTCATCTTGAACTTCGAGGACCGTAACGGAAAACCCTGGCGCTTCCGTTACTCCTACTGGAACAGCAGCCAAAGCTACGTCATGACCAAAGGCTGGAGCCGTTTCGTCAAGGACAAGAAGCTCGACGCCGGCGACGTTGTCTCCTTCCAGCGTGGCCTCGGCGATTCCGCCAAGGACCGCCTCTTCATCGACTGGCGCCGCCGCCCCGACGCCCCTCGTCCTCTCCACCACTTCTCCAACCCTCTCCTCCTCCTCCCTCAGTCCCTCCGCTGGGCCTCCTCCCGCCACTACACTCTCCCTCCGCCGCCTCCGCCGCCGCCCAGACGAACCCACCACCCACTCCATAGTTACTCCAATCTCTACCCCAATTACGCCTTTGAAATGCCCAATTTGGGAGTGGGAAATGGGGATGGGGTCGTGGTTCATAATGAAGGGTCTTCAATGGGGATGAACAAAGCCGACTCCGGCGTTTCCACGGCGGCGAAACGGCTGCGGCTGTTTGGAGTGAACATGGAGTGTGCTGCAGCGGATCATGGAGACGGAGGAGAAGAGGATCTGTCAAACGGAGGCGTTTCGAGGAGAGGGAAAGAGCCCTTGTCGTTGAATTGGGATTTACTTTAA 1029 53.55 MEFLTKSKEEVEEDQEEEEEEEIPTLACDFFSNSHSHHNLQQQHQHQHQHQWLEESPNHQFQNQQPVMDLSLRMDSNNGSDSNNNNNNNGFAAVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSTTNDKGLILNFEDRNGKPWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDVVSFQRGLGDSAKDRLFIDWRRRPDAPRPLHHFSNPLLLLPQSLRWASSRHYTLPPPPPPPPRRTHHPLHSYSNLYPNYAFEMPNLGVGNGDGVVVHNEGSSMGMNKADSGVSTAAKRLRLFGVNMECAAADHGDGGEEDLSNGGVSRRGKEPLSLNWDLL 342
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 16011459 16012573 - Lag0015556.1 Lac12g1184 589781
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1184 342 MobiDBLite consensus disorder prediction 313 327 - -
Lac12g1184 342 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 17 307 IPR044800 GO:0003700(InterPro)
Lac12g1184 342 MobiDBLite consensus disorder prediction 311 342 - -
Lac12g1184 342 SMART B3_2 100 205 IPR003340 GO:0003677(InterPro)
Lac12g1184 342 Pfam B3 DNA binding domain 100 204 IPR003340 GO:0003677(InterPro)
Lac12g1184 342 SUPERFAMILY DNA-binding pseudobarrel domain 97 205 IPR015300 -
Lac12g1184 342 CDD B3_DNA 98 187 IPR003340 GO:0003677(InterPro)
Lac12g1184 342 ProSiteProfiles B3 DNA-binding domain profile. 100 205 IPR003340 GO:0003677(InterPro)
Lac12g1184 342 MobiDBLite consensus disorder prediction 1 23 - -
Lac12g1184 342 Coils Coil 1 21 - -
Lac12g1184 342 Gene3D - 93 215 IPR015300 -
Lac12g1184 342 FunFam B3 domain-containing protein 93 214 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1184 Lac-Chr12:16011459 Lac13g0460 Lac-Chr13:3330246 7.50E-40 dispersed
Lac10g2827 Lac-Chr10:42821416 Lac12g1184 Lac-Chr12:16011459 2.10E-40 transposed
Lac11g1849 Lac-Chr11:33348978 Lac12g1184 Lac-Chr12:16011459 7.80E-59 transposed
Lac5g2156 Lac-Chr5:40128244 Lac12g1184 Lac-Chr12:16011459 3.80E-56 transposed
Lac12g1184 Lac-Chr12:16011459 Lac8g1280 Lac-Chr8:27917084 1.00E-36 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23060 PF02362 B3 4.10E-29 CL0405 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1184 K09287 - csv:101221141 358.607