Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g1270 | ATGTGGTTGAGTAGTGAGATTGAAAGCCTCTGGGTTTTCGCCTTGGCTTCCAAATGCTCCGCTCTCACCAAACAAAACCTCCTTTGCTCTCTACTCTTCCTTTTCCTTATTTGGTTTCTCCTTTCTATTTTCAATTGGGCCCATCCTGGCGGTCCTGCTTGGGGCCGTCACCGAAATTCCTCCGCCGCCACCGCCGCCATCATTCCTGGGCCTAGAGGCCTCCCCGTCCTTGGGAGCATGAGCCTGATGACCGGCCTGGCCCACCAACGAATCGCGGCCATGGCCAAATCCCTAGGCGCCACCCGCCTCATGGCCTTCTCACTCGCCAACACTCCCGTGATCGTCACATGCAACCCGGACGTGGCCAAAGACATCCTCAACAGCTCCGTCTTCGCGGACCGTCCGATCAAGGAATCCGCTTACTCGTTGATGTTCAATCGCGCCATTGGATTCGCCCCTTACGGCGTCTATTGGCGGACCCTTCGACGAATCGCTTCACACCACCTCTTCTGCCCCAAACAAATCAAATCCTCCGAGTCCCAACGCCGCCGAATCGCTTCCCAAATGGTCACAATGTTCTCCAACACGACCTCGTCCCACCAAGTTCGTGACACTCTCAAAAGAGCCTCTTTGAACCACATGATGGGCTCAGTCTTCGGCCGCTTCTACAACCTCTCAGACTCCAACAACGAAGTCGACCACCTCAAAGACCTCGTCGATGAAGGCTACGACTTATTGGGCCTTCTCAACTGGTCCGACCATCTCCCCTTCTTAGCCGACTTCGACCCACAGAGAATCCGCTTCAGATGCTCCCGCTTGGTCCCCAAAGTGAACCGCTTCGTCGCCACCATCATCGCCGACCACCGCTCCAAACCAACCCAACAGACCATGGATTTCGTCGACGTTCTTCTCTCTCTTCAACAAACAGACAAACTCTCTGACTCCGATATGATCGCCGTTCTTTGGGAAATGATATTCAGAGGGACAGACACGGTGGCGGTTTTGATAGAGTGGATTCTGGCGAGGATGGTGGTTCACAAGGACGAGCAGGAAAAGGTACAAGACGAATTAGATAAGGTTGTTGGTACATCACGCGCCGTCGTGGAGTCCGACATTCCGTCCTTGGTTTATCTAACGGCGGTGGTTAAGGAAGTTCTCAGGTTGCACCCGCCGGGCCCACTTCTGTCATGGGCCCGCCTCGCCATCACTGATACAATCGTCGATGGCCATCACGTGCCTCGCGGGACCACCGCTATGGTGAACATGTGGTCGATAGCGCGGGACCCACAGGTCTGGTCGGACCCACTCCAGTTTATGCCCCAGAGGTTTGTGTCCGGTTCCGGTGTTGGTGCTGACGTGGAGTTTTCTGTTATGGGTTCGGACCTCCGGTTGGCTCCGTTCGGGTCGGGTCGCAGGACTTGCCCCGGGAAGGCACTCGCTTGGACAACTGTCACCTTCTGGGTGGCTACTCTTTTACACGAATTTAAATGGCTGCCTTCATCGAACCAAAACGACGCCGTCGACTTCTCTGAAAATCTCAAGCTCTCTTGTGAGATGGCCAATCCACTCACCGTTAAACTATGCCCAAGGCGCTAA | 1596 | 54.95 | MWLSSEIESLWVFALASKCSALTKQNLLCSLLFLFLIWFLLSIFNWAHPGGPAWGRHRNSSAATAAIIPGPRGLPVLGSMSLMTGLAHQRIAAMAKSLGATRLMAFSLANTPVIVTCNPDVAKDILNSSVFADRPIKESAYSLMFNRAIGFAPYGVYWRTLRRIASHHLFCPKQIKSSESQRRRIASQMVTMFSNTTSSHQVRDTLKRASLNHMMGSVFGRFYNLSDSNNEVDHLKDLVDEGYDLLGLLNWSDHLPFLADFDPQRIRFRCSRLVPKVNRFVATIIADHRSKPTQQTMDFVDVLLSLQQTDKLSDSDMIAVLWEMIFRGTDTVAVLIEWILARMVVHKDEQEKVQDELDKVVGTSRAVVESDIPSLVYLTAVVKEVLRLHPPGPLLSWARLAITDTIVDGHHVPRGTTAMVNMWSIARDPQVWSDPLQFMPQRFVSGSGVGADVEFSVMGSDLRLAPFGSGRRTCPGKALAWTTVTFWVATLLHEFKWLPSSNQNDAVDFSENLKLSCEMANPLTVKLCPRR | 531 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 18458668 | 18460369 | - | Lag0015642.1 | Lac12g1270 | 589867 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g1270 | 531 | SUPERFAMILY | Cytochrome P450 | 68 | 530 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | CDD | CYP78 | 99 | 523 | - | - | |
| Lac12g1270 | 531 | PRINTS | P450 superfamily signature | 380 | 391 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | P450 superfamily signature | 474 | 485 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | P450 superfamily signature | 465 | 474 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | P450 superfamily signature | 327 | 344 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | Gene3D | Cytochrome P450 | 54 | 527 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | FunFam | Cytochrome P450 78A5 | 60 | 530 | - | - | |
| Lac12g1270 | 531 | PRINTS | E-class P450 group I signature | 421 | 445 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | E-class P450 group I signature | 316 | 333 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | E-class P450 group I signature | 474 | 497 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | E-class P450 group I signature | 336 | 362 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | E-class P450 group I signature | 379 | 397 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | E-class P450 group I signature | 209 | 227 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PRINTS | E-class P450 group I signature | 464 | 474 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | Pfam | Cytochrome P450 | 69 | 504 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1270 | 531 | PANTHER | CYTOCHROME P450 78A7-RELATED | 6 | 526 | IPR051996 | - | |
| Lac12g1270 | 531 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 467 | 476 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g1270 | Lac-Chr12:18458668 | Lac1g2872 | Lac-Chr1:49670502 | 1.10E-66 | dispersed | |
| Lac10g0177 | Lac-Chr10:1350135 | Lac12g1270 | Lac-Chr12:18458668 | 1.30E-136 | transposed | |
| Lac13g0055 | Lac-Chr13:387837 | Lac12g1270 | Lac-Chr12:18458668 | 9.40E-132 | transposed | |
| Lac6g0806 | Lac-Chr6:6920298 | Lac12g1270 | Lac-Chr12:18458668 | 2.20E-139 | transposed | |
| Lac12g1270 | Lac-Chr12:18458668 | Lac9g1389 | Lac-Chr9:31547352 | 8.00E-33 | wgd | |
| Lac12g1270 | Lac-Chr12:18458668 | Lac9g0389 | Lac-Chr9:6960956 | 6.60E-136 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g1270 | K20619 | - | csv:101216159 | 868.611 |