Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1344 ATGGGGAAGAAGGGAGCTACCTCATGGTTGACCGCCGTCAAAAGGGCCTTCAGATCTCCCTCTAAAGATGATGATGAAAAGAGGAGAGAGAAACGCCGCTGGATTTTCAGAAAGCCAACCAATCACCATCAACAACCACCGCCCACTGATTCCCTAGCTTTACAAGACCACAAACATGTCCTTGCAGTGGCTGAAGCAGCCATGGCCGCCGCCCGAGCGGCTCAACAAGCTGTCCACCTCACCCACCCTGCCCCTGCCCCAGCCGGATTGGATCGCCATCGCCATAGCCATGCCGCCACTGTCATTCAAACGGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCACTAAAAGGGTTGGTGAAGTTGCAAGCATTGGTGAGAGGACACAATGTGAGGAAGCAGGCGAAGACGACGCTGCAGTGCATGAAGGCATTAGTGAGAGTGCAAGAACAAGTGCTTGATCATCGGATGAGACTCTCCCTCGAAGGCAGTCGACGATCTACCTTCAGCGACACGAACAGCGTCTACGAAAATCGCTATGTTCAAGACGTCTCCGAAAGGAAGACTATTTGTCTATCAAGAGAAGGAAGCAACGTTACAGACGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTTAAGGCAATGTTACAGCACAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCACTCCTTTTCTCAACAGATATGGAGGACCGGAAAGAGCCCATCAATAGGAAACCAAAGAGAGCTTGAAGAAGGACAAAAATGGCTTGACCAGTGGATGGCGAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCATAGATCACAGACCACAGCCCCTTAAAACTCTCGAAATCGATACCTCTCGACCGTACTCTTACTTATCTCCCAACAATCTCCACACAACCAATTATCAAACTCAATCACAAAGATCCAACTCGCTCTCTTCCTCCTCCCCACTCCACATAGCCCAGCACCACCAGTTCCCTGTCACCCCATCCCCGTCGAAATCCCGCCCGGTCCAACAAGTCCGGTCGGCGAGTCCCCGCTGCAGCAGGGAAGATAGAAACCAAATCAGCCACCACCACATTACATCTCAAACGCCAAGCTTGAGGTCCAAGCATCAACAACATCACAGTGGGGGAGGTGGAGGGACTTCATTGCCTAACTACATGGCGGCAACAGAGTCGGCCAAGGCCCGAGTGCGATCGCAAAGTGCACCGAGGCAAAGGCCAGCAACGCCGGAGAGGGAACGAGTAGGGACGGCGAGGAAGCGGCTTTCGTTTCCGGTACCACCAGATCCTTACAGTAGAATGGTGGGGTGTGGAATGTATGGGAATAACATGAAGAGCCCGAGTTTTAAGAGTGTTTGTGGAAGGTATGGGGGGTTGGAGGAACGGTCTAACTATTCTTCTTGCTATACGGAGAGCCATGGAGGGGAGGTTTCTCCTTCTTCAACCACTGATCTGAGGAGGTGGTTGAGATGA 1506 51.79 MGKKGATSWLTAVKRAFRSPSKDDDEKRREKRRWIFRKPTNHHQQPPPTDSLALQDHKHVLAVAEAAMAAARAAQQAVHLTHPAPAPAGLDRHRHSHAATVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEQVLDHRMRLSLEGSRRSTFSDTNSVYENRYVQDVSERKTICLSREGSNVTDDWDERPHTVEEVKAMLQHRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQRELEEGQKWLDQWMAKKPWESRARASIDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHIAQHHQFPVTPSPSKSRPVQQVRSASPRCSREDRNQISHHHITSQTPSLRSKHQQHHSGGGGGTSLPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYSRMVGCGMYGNNMKSPSFKSVCGRYGGLEERSNYSSCYTESHGGEVSPSSTTDLRRWLR 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21464418 21467305 - Lag0015716.1 Lac12g1344 589941

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1344 501 ProSiteProfiles IQ motif profile. 119 146 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 17 32 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 476 501 - -
Lac12g1344 501 PANTHER IQ-DOMAIN 5-RELATED 9 430 - -
Lac12g1344 501 ProSiteProfiles IQ motif profile. 95 123 - -
Lac12g1344 501 SMART iq_5 94 116 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 SMART iq_5 117 138 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 Pfam Protein of unknown function (DUF4005) 354 461 IPR025064 -
Lac12g1344 501 MobiDBLite consensus disorder prediction 368 390 - -
Lac12g1344 501 Gene3D - 92 147 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 1 52 - -
Lac12g1344 501 FunFam IQ-domain 11 94 145 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 286 427 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 295 354 - -
Lac12g1344 501 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 Pfam IQ calmodulin-binding motif 122 138 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 140 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1344 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1344 Lac-Chr12:21464418 Lac8g2437 Lac-Chr8:42431493 4.80E-27 dispersed
Lac7g0055 Lac-Chr7:491852 Lac12g1344 Lac-Chr12:21464418 3.70E-128 transposed
Lac12g1344 Lac-Chr12:21464418 Lac7g2061 Lac-Chr7:33503419 5.80E-09 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2437 . 1 479 IQD Protein Family AT3G52290 54.6 1.4e-104 377.5
Lac3g1549 . 319 712 IQD Protein Family AT3G22190 58.3 1.4e-93 340.9
Lac2g0466 . 1 437 IQD Protein Family AT2G26180 59.5 7.0e-117 418.3
Lac1g3383 . 77 355 IQD Protein Family AT2G33990 52.3 1.5e-64 243.8
Lac5g2434 . 36 223 IQD Protein Family AT2G33990 57.1 1.7e-52 203.8
Lac5g2434 . 21 230 IQD Protein Family AT3G15050 56.6 2.8e-55 213.0
Lac8g2087 . 128 472 IQD Protein Family AT5G13460 52.4 4.2e-75 279.6
Lac7g0055 . 1 506 IQD Protein Family AT4G00820 55.1 3.9e-128 456.1
Lac12g1344 . 98 501 IQD Protein Family AT4G00820 56.8 1.0e-104 378.3
Lac7g0055 . 1 506 IQD Protein Family AT1G01110 52.4 4.4e-124 442.6
Lac12g1344 . 98 501 IQD Protein Family AT1G01110 53.0 3.4e-100 363.2
Lac4g2932 . 1 395 IQD Protein Family AT3G16490 52.3 1.0e-72 271.6
Lac3g0966 . 1 395 IQD Protein Family AT3G16490 51.8 8.7e-69 258.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54