Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1344 ATGGGGAAGAAGGGAGCTACCTCATGGTTGACCGCCGTCAAAAGGGCCTTCAGATCTCCCTCTAAAGATGATGATGAAAAGAGGAGAGAGAAACGCCGCTGGATTTTCAGAAAGCCAACCAATCACCATCAACAACCACCGCCCACTGATTCCCTAGCTTTACAAGACCACAAACATGTCCTTGCAGTGGCTGAAGCAGCCATGGCCGCCGCCCGAGCGGCTCAACAAGCTGTCCACCTCACCCACCCTGCCCCTGCCCCAGCCGGATTGGATCGCCATCGCCATAGCCATGCCGCCACTGTCATTCAAACGGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCACTAAAAGGGTTGGTGAAGTTGCAAGCATTGGTGAGAGGACACAATGTGAGGAAGCAGGCGAAGACGACGCTGCAGTGCATGAAGGCATTAGTGAGAGTGCAAGAACAAGTGCTTGATCATCGGATGAGACTCTCCCTCGAAGGCAGTCGACGATCTACCTTCAGCGACACGAACAGCGTCTACGAAAATCGCTATGTTCAAGACGTCTCCGAAAGGAAGACTATTTGTCTATCAAGAGAAGGAAGCAACGTTACAGACGATTGGGATGAACGTCCTCACACAGTTGAAGAAGTTAAGGCAATGTTACAGCACAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCACTCCTTTTCTCAACAGATATGGAGGACCGGAAAGAGCCCATCAATAGGAAACCAAAGAGAGCTTGAAGAAGGACAAAAATGGCTTGACCAGTGGATGGCGAAGAAGCCATGGGAGAGCAGGGCAAGAGCTTCCATAGATCACAGACCACAGCCCCTTAAAACTCTCGAAATCGATACCTCTCGACCGTACTCTTACTTATCTCCCAACAATCTCCACACAACCAATTATCAAACTCAATCACAAAGATCCAACTCGCTCTCTTCCTCCTCCCCACTCCACATAGCCCAGCACCACCAGTTCCCTGTCACCCCATCCCCGTCGAAATCCCGCCCGGTCCAACAAGTCCGGTCGGCGAGTCCCCGCTGCAGCAGGGAAGATAGAAACCAAATCAGCCACCACCACATTACATCTCAAACGCCAAGCTTGAGGTCCAAGCATCAACAACATCACAGTGGGGGAGGTGGAGGGACTTCATTGCCTAACTACATGGCGGCAACAGAGTCGGCCAAGGCCCGAGTGCGATCGCAAAGTGCACCGAGGCAAAGGCCAGCAACGCCGGAGAGGGAACGAGTAGGGACGGCGAGGAAGCGGCTTTCGTTTCCGGTACCACCAGATCCTTACAGTAGAATGGTGGGGTGTGGAATGTATGGGAATAACATGAAGAGCCCGAGTTTTAAGAGTGTTTGTGGAAGGTATGGGGGGTTGGAGGAACGGTCTAACTATTCTTCTTGCTATACGGAGAGCCATGGAGGGGAGGTTTCTCCTTCTTCAACCACTGATCTGAGGAGGTGGTTGAGATGA 1506 51.79 MGKKGATSWLTAVKRAFRSPSKDDDEKRREKRRWIFRKPTNHHQQPPPTDSLALQDHKHVLAVAEAAMAAARAAQQAVHLTHPAPAPAGLDRHRHSHAATVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEQVLDHRMRLSLEGSRRSTFSDTNSVYENRYVQDVSERKTICLSREGSNVTDDWDERPHTVEEVKAMLQHRRDAALNRDNILSHSFSQQIWRTGKSPSIGNQRELEEGQKWLDQWMAKKPWESRARASIDHRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHIAQHHQFPVTPSPSKSRPVQQVRSASPRCSREDRNQISHHHITSQTPSLRSKHQQHHSGGGGGTSLPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYSRMVGCGMYGNNMKSPSFKSVCGRYGGLEERSNYSSCYTESHGGEVSPSSTTDLRRWLR 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 21464418 21467305 - Lag0015716.1 Lac12g1344 589941
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1344 501 ProSiteProfiles IQ motif profile. 119 146 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 17 32 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 476 501 - -
Lac12g1344 501 PANTHER IQ-DOMAIN 5-RELATED 9 430 - -
Lac12g1344 501 ProSiteProfiles IQ motif profile. 95 123 - -
Lac12g1344 501 SMART iq_5 94 116 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 SMART iq_5 117 138 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 Pfam Protein of unknown function (DUF4005) 354 461 IPR025064 -
Lac12g1344 501 MobiDBLite consensus disorder prediction 368 390 - -
Lac12g1344 501 Gene3D - 92 147 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 1 52 - -
Lac12g1344 501 FunFam IQ-domain 11 94 145 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 286 427 - -
Lac12g1344 501 MobiDBLite consensus disorder prediction 295 354 - -
Lac12g1344 501 Pfam IQ calmodulin-binding motif 97 116 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 Pfam IQ calmodulin-binding motif 122 138 IPR000048 GO:0005515(InterPro)
Lac12g1344 501 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 140 IPR027417 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1344 Lac-Chr12:21464418 Lac8g2437 Lac-Chr8:42431493 4.80E-27 dispersed
Lac7g0055 Lac-Chr7:491852 Lac12g1344 Lac-Chr12:21464418 3.70E-128 transposed
Lac12g1344 Lac-Chr12:21464418 Lac7g2061 Lac-Chr7:33503419 5.80E-09 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1344 - - - 0.0