Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g1394 | ATGCAAACAACAAGTGACTTTGTTCCTATTTTTGGTTACCGAAGAAGGTCCTACTTAATTTTATCAAGGCTCGTTGGTGCGTTCTCATTGAGCTTTATGGCTACCATTGTTAATAGCAAGTATGGTACTGCTACGTGTATACTTCTCGGGTCTCTTTCTGTGGCGTTTTCTGATGTTGGTTGTGTTAGGTATTTGAAACCTAACAAGTTTTTTGGTGAGATAATAGTTAAGTTGAATTATAGGCCAAAACATCCCAAAACTGTGTTGATTATGGATGAGGTAGATGGAATGTCTGCTGGAGATAGGGGTGGAGTTGCTGATCTGATTGCGAGCATTAAAATCTCCAAAATTCCAATTATCTGCATCTGTAATGACCGGTACAACCAAAAGCTAAAAAGCCTTGTGAACTATTGTCTGATTCTCAACTTTAGGAAACCTACAAAACAACAGGAACTAGCAGAAAGAGTTAATGGGGATATACTTATGGCATTAAATCAGTTGCAGTACCTGAGTCTGTCAATGTCAGTTATTAAATATGACGATATTCGTCAACGGCTTATGGGCAGTATGAAAGACAAAGACATCTCACCATTCACTGCTGACAAGTGTTGGGTTCCTAGACGGATTCCTCCCGGAACTCCGGATCTTTTGGGATGTGTTTCAACCCCAATGAAGTGTGACCGATCAGGCACTAGGCAACTGGCTATCCCTAGCTCAGTCACTGGCGTTCACCAATACACAATGATCGTAATGTGGAGAATTGCCACACACTCTCTAAATCATCCCTGA | 789 | 41.06 | MQTTSDFVPIFGYRRRSYLILSRLVGAFSLSFMATIVNSKYGTATCILLGSLSVAFSDVGCVRYLKPNKFFGEIIVKLNYRPKHPKTVLIMDEVDGMSAGDRGGVADLIASIKISKIPIICICNDRYNQKLKSLVNYCLILNFRKPTKQQELAERVNGDILMALNQLQYLSLSMSVIKYDDIRQRLMGSMKDKDISPFTADKCWVPRRIPPGTPDLLGCVSTPMKCDRSGTRQLAIPSSVTGVHQYTMIVMWRIATHSLNHP | 262 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 23379581 | 23382695 | - | Lag0015766.1 | Lac12g1394 | 589991 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g1394 | 262 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 62 | 184 | IPR027417 | - | |
| Lac12g1394 | 262 | Gene3D | - | 50 | 145 | IPR027417 | - | |
| Lac12g1394 | 262 | PANTHER | CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 | 73 | 200 | - | GO:0003677(PANTHER)|GO:0005634(PANTHER) | |
| Lac12g1394 | 262 | Pfam | BT1 family | 5 | 59 | IPR039309 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac11g1164 | Lac-Chr11:15018804 | Lac12g1394 | Lac-Chr12:23379581 | 2.10E-24 | dispersed | |
| Lac12g1394 | Lac-Chr12:23379581 | Lac9g2747 | Lac-Chr9:45641661 | 9.70E-56 | dispersed | |
| Lac12g1393 | Lac-Chr12:23369568 | Lac12g1394 | Lac-Chr12:23379581 | 4.30E-11 | tandem | |
| Lac12g1394 | Lac-Chr12:23379581 | Lac13g2182 | Lac-Chr13:33333581 | 3.10E-09 | wgd | |
| Lac12g1394 | Lac-Chr12:23379581 | Lac3g2239 | Lac-Chr3:29820893 | 1.20E-08 | wgd | |
| Lac12g1394 | Lac-Chr12:23379581 | Lac6g1781 | Lac-Chr6:28163464 | 6.80E-09 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g1394 | K10754 | - | rcu:8281056 | 200.675 |