Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1461 ATGAATACTGGGGATTATATCAATATTCAACCCGCCGAGCTCAAATTCCCATTTGAATTGAGGAAGCAAAGTTCTTGTTCCTTGCAACTGACCAACAAAACGGACAAATATGTTGCCTTCAAGGTTAAAACCACCAATCCCAAGAAGTACTGTGTTCGGCCAAATGCTGGAATTATTTTGCCTAGTAGTGCAAGCAATATTACAGTTACCATGCAAGCTCCAAAGGAGACGCCTCCTGATATGCAGTGCAAGGATAAGTTCTTAATTCAAAGTGTTGTAGCACCAGATGGTACAGCATCAAAGGACATTAGTGCAGAATTGTTTAACAAGGGAGATGGTAAAGTAGTAGATGAATTCAAGATGAGGGTTGTTTACATTTTTGCAAATCCTCCATCACCTGTCCCAGAAGGATCTGAAGAAGGATCTCCTCCCAGGACCACTGCAGCTGAAGATGGAAACCAAAATTTTGCATTGTTTGATGCTGTTTCAAGATCTCTGGAGGAACCTAAAGAGAAATCATCACAGGCATTGTCTACCGTTTCTAAGTTGACTGAGGAGAAAACTGCTGCTTTGCAACAGAATCAGAAACTGCGCCAGGAGCTGGAACTTCTGAGGAAAGAAACGAGTGGAAGGCAGGGTGGTGGTTTCTCTGTATTGTTCGTGGTGCTCGTCGGTCTCATCGGTGTTCTGATCGGCTATTTGGTGAAGAAAACATAG 717 42.96 MNTGDYINIQPAELKFPFELRKQSSCSLQLTNKTDKYVAFKVKTTNPKKYCVRPNAGIILPSSASNITVTMQAPKETPPDMQCKDKFLIQSVVAPDGTASKDISAELFNKGDGKVVDEFKMRVVYIFANPPSPVPEGSEEGSPPRTTAAEDGNQNFALFDAVSRSLEEPKEKSSQALSTVSKLTEEKTAALQQNQKLRQELELLRKETSGRQGGGFSVLFVVLVGLIGVLIGYLVKKT 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 26519509 26531271 - Lag0015833.1 Lac12g1461 590058

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1461 238 Coils Coil 180 207 - -
Lac12g1461 238 SUPERFAMILY PapD-like 2 138 IPR008962 -
Lac12g1461 238 PANTHER VESICLE-ASSOCIATED MEMBRANE PROTEIN-ASSOCIATED PROTEIN 7 235 IPR016763 GO:0005789(InterPro)|GO:0005789(PANTHER)|GO:0005886(PANTHER)|GO:0061817(PANTHER)|GO:0090158(PANTHER)
Lac12g1461 238 Pfam MSP (Major sperm protein) domain 7 109 IPR000535 -
Lac12g1461 238 MobiDBLite consensus disorder prediction 130 152 - -
Lac12g1461 238 PIRSF VAMP_assoc_prot 1 237 IPR016763 GO:0005789(InterPro)
Lac12g1461 238 FunFam Vesicle-associated protein 1-1 1 129 - -
Lac12g1461 238 Gene3D Immunoglobulins 2 128 IPR013783 -
Lac12g1461 238 ProSiteProfiles Major sperm protein (MSP) domain profile. 6 126 IPR000535 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1461 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2281 Lac-Chr11:38894938 Lac12g1461 Lac-Chr12:26519509 1.70E-75 dispersed
Lac12g1461 Lac-Chr12:26519509 Lac7g0834 Lac-Chr7:6727822 8.30E-38 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g368 . . . . . . . . . . Cma06g01460 Cma14g01647 Car06g01260 Car14g01480 . Cpe08g00218 Cpe03g01391 Bhi01g00928 Tan10g0943 . . . . . . . . . . . . . . . . Lsi05g01497 . . Cme06g00685 . . Bda11g00542 . . Bpe13g00647 . Bma06g01519 Sed01g4000 Cmo06g01461 Cmo14g01691 . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . . Csa03g01409 Chy06g00652 .
Vvi5g986 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g4000 . . . . . . . . Bhi12g02125 Tan06g1925 Cmetu09g0227 Lac12g1461 Hepe03g0639 . Lcy13g0912 . . . . . . . Lsi09g01624 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000979 4 2 2 4 4 2 3 2 2 2 2 2 3 2 2 4 2 6 4 2 2 3 2 2 2 2 2 6 3 3 83