Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1511 ATGCAAGCTCAAATACTGACCATTGTTCATCATAGAAATCTGGTTTCTCTCATTGGTTACTGTGATGAGGCTGAGAATAAGGCGCTCATTTATGAATTTATGGCTAATGGAAATCTACGGAAATATCTATCCGATTCAAGCACAGATGTATTGAATTGGACGCAAAGACTCCAAATTGCACTTGATGCAGCACAAGGGCTGGAGTATTTGCACAATTCTTGCAAGCCACCTATAATTCACAGAGATTTGAAGACTTCAAATATCTTATTGAATGAAAGAATGCAGGCTAAAATATCAGATTTTGGACTCTCCAGGATATTGGCAAATGAAAATGATACTCATTTGTCCACATGTCTAGCTGGCACCTTTGGATATGTCGACCCGACGATTCATTTGTCAGGAAACTTCACCAAGAAAAGCGATGTTTACAGTTTCGGGATCGTCTTATTTGAGTTGATCACAGGTCAGCCTGCCATAATCAAGGGCTCCGAAATCAACATCCACATAGTGGATTGGGCAAAGCCTCTGATTTTAGAAGGCAACAACCAAAGCATTGTGGATCAAAGATTAGAAGGCTCCATTGAAAGTTGTTCAGCTAGAAAATTTATGGAGCTGGCTTTGTCTTGCACACAGTCAACTTCAACACAAAGGCCTGAAATGAGTGATGTGGTGAAACAACTCATTGAGTGTCAAGAAATGGCTCTGAACAGAACTGCTCATAGGCCACTTAACAATGAAAACTTTTCATATAATTCAATTGGCTCTGATTCAATTTTAAGTCCTAGATAG 789 39.42 MQAQILTIVHHRNLVSLIGYCDEAENKALIYEFMANGNLRKYLSDSSTDVLNWTQRLQIALDAAQGLEYLHNSCKPPIIHRDLKTSNILLNERMQAKISDFGLSRILANENDTHLSTCLAGTFGYVDPTIHLSGNFTKKSDVYSFGIVLFELITGQPAIIKGSEINIHIVDWAKPLILEGNNQSIVDQRLEGSIESCSARKFMELALSCTQSTSTQRPEMSDVVKQLIECQEMALNRTAHRPLNNENFSYNSIGSDSILSPR 262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28054676 28056571 - Lag0015883.1 Lac12g1511 590108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1511 262 PANTHER OS01G0750732 PROTEIN 3 235 IPR050885 -
Lac12g1511 262 ProSiteProfiles Protein kinase domain profile. 1 235 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1511 262 Pfam Protein tyrosine and serine/threonine kinase 3 227 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g1511 262 SMART serkin_6 3 234 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1511 262 FunFam LRR receptor-like serine/threonine-protein kinase IOS1 34 240 - -
Lac12g1511 262 Gene3D Phosphorylase Kinase; domain 1 1 34 - -
Lac12g1511 262 Gene3D Transferase(Phosphotransferase) domain 1 35 251 - -
Lac12g1511 262 ProSitePatterns Serine/Threonine protein kinases active-site signature. 78 90 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g1511 262 SUPERFAMILY Protein kinase-like (PK-like) 3 227 IPR011009 -
Lac12g1511 262 PIRSF ILK 2 243 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1511 Lac-Chr12:28054676 Lac4g2939 Lac-Chr4:47715242 2.60E-117 dispersed
Lac12g1511 Lac-Chr12:28054676 Lac12g1512 Lac-Chr12:28060823 8.90E-118 tandem
Lac12g1511 Lac-Chr12:28054676 Lac4g0481 Lac-Chr4:11099170 4.90E-08 wgd
Lac12g1511 Lac-Chr12:28054676 Lac9g0835 Lac-Chr9:17529861 6.80E-28 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85809 PF07714 PK_Tyr_Ser-Thr 2.80E-42 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1511 - - - 0.0