Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1513 ATGTTGAAAACTGCCACTGGAACCCTAAATTCCAGCATTCCTTTCGTCTACAACTGGAGCCCTGAAGATGCCAGCTCTCTATTCTATTTCTGCTTTCATTTCGCTGAGATTGAGGAGTTGGATTCTGTAAGAGAAATGAGTATCGTCTTGAATGACAACCAGATCATTGCACAATCTGTGAAGCTCCAGTATCTCAAGCCACAAACCATATGCTCATCTTCGGCTGGTCTCCCCGTTAATCTCAATCAAGATAATTATTTACGGATTTCTGCAGCCTCTGGTTCGAATCTTCCTCCCATCATCAATGGCCTCGAGGTTTTTCATTTGCGGGAGTTCTCTGATTCGCCTACATTCTTATGGGACGTTAACGCCATAAGGGATATCAAGAAGACGTTTAAACTATTGAAGAGGGACTGGCAAGGGGATCCATGTTTGCCTGCACGTTCTGTATGGAATGGTTTAAACTGCAGCCATAGTAATCCCCCAAGGATAATTTCATTAAACTTGAGCAGGAGCAAGTTAACAGGAGAGATCCCATTTTCCATCTCCAATCTCACTCAATTGGAGACTCTGGATTTATCCTACAATGACTTGAGTGGATCACTTCCAGAATTTTTAGCGCAACTACCTCGTTTGAAAATCCTCAATTTAGTTGGGAATAATCTTGGAGGCATAGTTCCTGAAGCACTTCTTGTGAAATCTAGAGATGGAGGCTTGGATTTGAGTGTGGCTGATAATCCAGAACTCTGCTTGTCACCTCCTTGCAAGAAAAAGAGTCATTCTGTTGTTGTTCCTGTTATCATTTCTATCTCGGCAGCCTCTGTTCTAAATACTCTGCTTCAGAGTTCCAAAGAGAAGATTACACTGAAGCCAAAAAATCGGGAGTACAGTTACTCGGAAGTTGTGAATATTACTGATAATTTCAAACACGTTATTGGAGAAGGAGGGTTTGGGAAAGTATATAAAGGTGTATTGAAAGATAAAACTATGGTTGCTGTTAAGTTGCTGTCTTCAAAATCAAAGCAGGGCGACAAGGAATTTCAAGCTGAGGCACAACTCTTAATGATCGTTCATCACCGAAACTTGGTTTCTCTTGTTGGATATTGCTACGAGGGCGACACCAAGGCACTCATTTATGAACACATGGTCAATGGAAATTTGCAGCAACACTTGTCTGAAACAAACACAAATGTTCTGAGTTGGAACGAAAGACTTCAAATTGCAGTAGATGCAGCAAATGGGCTTGAGTATATACACAATGGCTGCAAGCCACCAATAGTTCACAGAGACTTGAAATCTGCCAACATACTACTAGATGACATGATGCAAGCCAAAATAGCTGATTTTGGATTATCTAGAACTTCCCCAACTGAAAGTCAATCTCACATAATTACCACACAGTTAGCTGGAACACCTGGGTACCTTGATCCCGAAAGCCAAACATGTGGAAATTTGAATAAGAAAAGTGACGCAATTTTGGACCACCCCGATATACAAGGAGCTGACGAGGACAACTGGGAAGAAATCAGACTGAAAGATGGACCAAGGAGGCAAAACCGGCAAGTGGGACGGGCCAAGACCGAAGGGGTCGGGTTTTTGGCCCGACCCCCTGCTCGGCCTCGGCCATGGGCCGAGGCCGACACTCGGCCCACTCGCGCGGGCCGAGTTCGTTCGATGCCGTTTTGTCCCCACTGTCTTTGGCCGCCTCGGTTTCGCCTAGTTTGA 1725 44.17 MLKTATGTLNSSIPFVYNWSPEDASSLFYFCFHFAEIEELDSVREMSIVLNDNQIIAQSVKLQYLKPQTICSSSAGLPVNLNQDNYLRISAASGSNLPPIINGLEVFHLREFSDSPTFLWDVNAIRDIKKTFKLLKRDWQGDPCLPARSVWNGLNCSHSNPPRIISLNLSRSKLTGEIPFSISNLTQLETLDLSYNDLSGSLPEFLAQLPRLKILNLVGNNLGGIVPEALLVKSRDGGLDLSVADNPELCLSPPCKKKSHSVVVPVIISISAASVLNTLLQSSKEKITLKPKNREYSYSEVVNITDNFKHVIGEGGFGKVYKGVLKDKTMVAVKLLSSKSKQGDKEFQAEAQLLMIVHHRNLVSLVGYCYEGDTKALIYEHMVNGNLQQHLSETNTNVLSWNERLQIAVDAANGLEYIHNGCKPPIVHRDLKSANILLDDMMQAKIADFGLSRTSPTESQSHIITTQLAGTPGYLDPESQTCGNLNKKSDAILDHPDIQGADEDNWEEIRLKDGPRRQNRQVGRAKTEGVGFLARPPARPRPWAEADTRPTRAGRVRSMPFCPHCLWPPRFRLV 574
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 28076363 28079330 - Lag0015885.1 Lac12g1513 590110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1513 574 Pfam Malectin-like domain 2 108 IPR024788 -
Lac12g1513 574 SUPERFAMILY L domain-like 150 230 - -
Lac12g1513 574 Gene3D Ribonuclease Inhibitor 122 237 IPR032675 -
Lac12g1513 574 SUPERFAMILY Protein kinase-like (PK-like) 288 490 IPR011009 -
Lac12g1513 574 ProSiteProfiles Protein kinase domain profile. 306 574 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1513 574 Gene3D Phosphorylase Kinase; domain 1 288 381 - -
Lac12g1513 574 Gene3D Transferase(Phosphotransferase) domain 1 382 491 - -
Lac12g1513 574 ProSitePatterns Protein kinases ATP-binding region signature. 312 334 IPR017441 GO:0005524(InterPro)
Lac12g1513 574 FunFam Os07g0541700 protein 382 471 - -
Lac12g1513 574 Pfam Leucine rich repeat 166 222 IPR001611 GO:0005515(InterPro)
Lac12g1513 574 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g1513 574 Pfam Protein tyrosine and serine/threonine kinase 308 490 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g1513 574 MobiDBLite consensus disorder prediction 515 551 - -
Lac12g1513 574 ProSiteProfiles Leucine-rich repeat profile. 187 209 IPR001611 GO:0005515(InterPro)
Lac12g1513 574 PANTHER OS07G0107800 PROTEIN-RELATED 3 491 - -
Lac12g1513 574 SMART serkin_6 306 562 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1513 574 FunFam Leucine-rich repeat receptor-like protein kinase 282 381 - -
Lac12g1513 574 FunFam Leucine-rich repeat receptor-like kinase 120 251 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1513 Lac-Chr12:28076363 Lac4g2944 Lac-Chr4:47765029 3.70E-241 dispersed
Lac7g0523 Lac-Chr7:4162850 Lac12g1513 Lac-Chr12:28076363 2.50E-36 dispersed
Lac12g1512 Lac-Chr12:28060823 Lac12g1513 Lac-Chr12:28076363 6.10E-118 tandem
Lac1g0589 Lac-Chr1:13899832 Lac12g1513 Lac-Chr12:28076363 5.00E-15 wgd
Lac12g1513 Lac-Chr12:28076363 Lac13g1819 Lac-Chr13:21968534 7.60E-33 wgd
Lac12g1513 Lac-Chr12:28076363 Lac2g2689 Lac-Chr2:41471281 5.30E-20 wgd
Lac12g1513 Lac-Chr12:28076363 Lac4g0365 Lac-Chr4:8515947 1.10E-08 wgd
Lac12g1513 Lac-Chr12:28076363 Lac5g1318 Lac-Chr5:25980279 1.20E-23 wgd
Lac12g1513 Lac-Chr12:28076363 Lac5g1287 Lac-Chr5:24841063 7.80E-23 wgd
Lac12g1513 Lac-Chr12:28076363 Lac6g1818 Lac-Chr6:30142720 3.10E-32 wgd
Lac12g1513 Lac-Chr12:28076363 Lac7g2337 Lac-Chr7:39385255 6.20E-23 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85811 PF07714 PK_Tyr_Ser-Thr 1.30E-38 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1513 - - - 0.0