Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g1517 | ATGGGAGTGGTGATCAAGCTAGACATTGCGAAAGCATTTGACACGGTTGATTGGGATTTCCTTGATGAAATATTAAAGGCTAAAGGGTTTGGTCAGCTATGGAGGAAATGGATTAGAGGATGTATATCATCAGCCAACTTCTCGATTATTATCAATGGTAAACCGAGAGGAAAGATCAGAGCTTCGAGGGGCCTTAGACAAGGTGGCCCTCTATCCCCGTTTTTATTCATATTAGTGGCTGATTGTCTTAGTCAAATGCTTCAAAAGGCTGAACAGGACTCCTCCATCGAAGGCTTTTGGGTTGGTGAAGGCCCACAAGCCATTAAAATCACTCATCTTCAGTTTGCGGACGACACCATCCTATTTTCATCTCCAAAGACATCGTGCATCACCAACCTGTTCAATGCTATTAGACTCTTTGAAGCTGCATCTGGGCTGAGTATTAATTGCAACAAGTCTGAATTTTTGGGCCTTGGTATGGAATCGCAGCAAGCCGCTCTCTTAGCATCTATGTATGGATATAAACACGGTTCTTGGCCGACCACATATTTGGGTCTTCCCCTACATGGTAACCCGAGAAGGTATAACTTCTGGACCCCTGTGATTGAAAAGAGCTTCACGATTTCTTCTTCCCTCCGGCGCCGTCAACCATCTTTGCTGTCGCCGTCTTCGCCATCGTCGCTCCTAGTAGCTCCAGAAGCCGCCGCTATCTTCTCCAAAGTTGCGGTTGAGAGTTGCCCACCCACCCACCTTTTTCTTCTCCAAGTTGCGGTCTTTTTCTTCTTAACTAAATGGGCTTGGAGATTCTATCATGAACCAAATGCTCTATGGAGGAAAATCATTGGCTCTAAATTTGGCACAGTTAGTAACCCTCTCAAAATGGGTGAAAAGTCCTTGAATTCTTCTAGGGGCTCGTGGCGTGCTATCCACAAATCAAAATACCTTATATATGATCACATTGACATTAGAGTTGGGAAAGGTGACAAAACTCTCTTTTGGGAGGACAATTGGCTTGGGTCTTCTCCTTTACAGTCCAAGTTCCCCTCTCTATTCAATCTCTCGCTCAAAAAGGATGCCCTTATAGCAGAATTATGGGAACCAACCAATGGGGCATGGAACCTTCATTTAAGAAGACACCTCTATGATTCTGAAATTCTGGAATGGGCTTTATTATCTCATCAACTGTCCTCTTTCTCCTTCAACAATACTGAAGACACTTGGGTTTGGAATCTGGAACAAAACGACTATTTTTCTACTGGATCCCTCACCCAAAAATTGGCTTCACAAGCTTACCAATCCAGTAATGATCTTTATGGCCAGCTGTGGAAGGGTCTTATGCCGAAAAAAGTTAAGTTCTTCATGTGGGAGCTCAGCCACAAGTGTATTAATACTGCAGATGTCATTCAGAGGCGATTCCCCAACTCCTCATTATCTCCTAGCTGCTGCTGCTCGTGTAACAAGGCTGCCGAATCACAAATTCATATTTTTAGTCGCTGTGAATATGCTGCATCTTTCTGGGACCACATTCAAGTCGCGTTTGGTTGGCAATTTGCTCGTCCGGGTGATGTCCTTTCCCTTCTTCAATTCACTCTTCTTGGGCATCCTTTTAAAAATGATTCTAAGACCCCTCTCCCCTTTCCTATCCCCTACAGAGCTCCATTTGACACAAAGATGTCTCGAAGATCGTCTAGGTTAGTGGAAAAAGCTAAGGAATATTTAGAGAAAACCACAATTAGTGAAACTGCAAAATCGTCCAGAACTAAGAGACGTGGTGTATCGGGGGGAAGCCATAAATCTTCTAGACGAAATCAGAAGTTGAAGCAGAATAATGAGATGAAGTTGAATGAAGTTCTGTCCGAGCAATTAGAAGGGAAGAAGAGAAAGACTTGTAGTAAGAGTTCAGTGGTCACAAGAGCAGCTGCTTCAAAGAATTTCGTGTTTGAAGGGATCAAAAAAGGGGGTGGGAGATCAATGAAGAGGCTGTATTATCAAAAAGTGGTTTTTGATGGAGGTGAATTTGAGGTGGGTGACGATGTCTATGTGAAGAGGAGAGAAGATGCAAGCTCTGACGACGAAGATCCTGAAGTTGAGGAGTGCAAAGTGTGCTTTAAGTCTGGGGAGGCTATAATGATTGAGTGTGATGATTGTCTTGGTGGTTTTCATTTGGATTGTTTGAAGCCGCCCATGAAGGAGGTCCCTGAGGGAGATTGGATTTGTGGGTTTTGTGAAGCTACTAAAATGGGCAAAGAGGTTCAGTTGCCAAATCCTCCAGAAGGTAAAAAACGGGTTAGGACAATGAGGGAGAAGCTTCTGGCGGGTGACTTGTGGGCTGCTCACATTGAAAGATTATGGAAAGAAGCAATTGGTATCTATCAGTGTAAGGTTAGATGGTATATAATCCCAGAAGAGACAGCAATGGGAAGGCAATCACATAACTTGAAGAGAGAGCTTTATCTAACTAATGACTATGCAGATATTGAGATGGAATCTCTTCTTAGACTGTGTCAAGTCATGGATCCTAAAGACTATAATAATGCCAAGGAAGGGGATGATATATTTTTATGCGAGTATGAGTATGACATTCGTTGGCATAGTTTCAAGCGGTTAGCTGAAATTGATAAAGAGGATGGTGAAGATAGTGACAGAGACTGGAAGTTGGACCAAAATGCAGACTTTGATTCAGATGGAGATGTGGAATATGAAGAAGAGAGAGCACAAATTTTACAATCTCGAATTTGCTCAAACACAACCCATGAATTGGCTGCGAATTCAAGGGAAGGACGATTTCGTGGACTACAAAAGATAGGAGCAAAGAAGATCCCAGAGCTTATAAGATGCCACAAACAGACTGAATTGGAAAGAGCAAAGGCAACCCTCATGTTGGCGTCATTACCCAAGTCTCTACCTTGTAGGAATAAGGAGATAGAGGAGATAACTACATTTATAGAAAGTGCTATATGTGATGATCAATGTTTGGGGCGATGCTTGTACATCCATGGTGTTCCAGGAACAGGCAAGACAATGAGTGTGCTGTCAGTAATGAGGAACTTGCGGGCTAAAGTTGATGCAGGACATATAAGGCCTCATTGCTTTGTGGAGGTTAATGGTCTAAAGCTGGCATCACCAGAAAATATATACAGGGTTATATATGAAGCATTAACTGGGCATAGGGTTAATTGGAAAAAGGCTCTTCAGTTGTTGACCAAACGGTTTTCAGATGTAAAGAATTGTCAAGAGGATGACCGACCTTGTATTCTGCTCATTGATGAACTTGATCTTCTTGTAACAAGAAATCAGTCAGTTCTATACACTATTCTTGATTGGCCTACAAAGCCACAAGCAAAGTTGATTGTGATAGGAATTGCAAACACCATGGACCTTCCTGAGAAGTTGCTTCCTCGGATTTCAAGCCGAATGGGTATCAAAAAGCTTTGTTTTGGCCCCTATAACCATCAACAACTTCAAGAAATCATTTTGAGTCGCCTCGAAGGAATTGACGCATTTGAAAAACAAGCTATTGAATTTGCATCAAGAAAGGTTGCTGCTATTTCAGGAGACGCACGTCGTGCTCTGGGGATATGTATGTGTGCAGCTGAAATTAAGGATTATCATATAAAGAAGCTGAGTTTGACTTCCAACAACGATATGAAAGCAAAAACACGTGTAGGAATAGCAGAGGTGGAAGCAGCCATTCAAGAAATGTTTCAAGCACCTCATATTCAAGTGATGAAGAGTTGTTCTAAGCTGAGTAAGATCTTCTTGACAGCTATGGTGCACGAACTTTATAAAACTGGAATGGGTGAAACAACCTTTGAAAAGGTTGCCATGACTATCCTGCATCTTTGTACAAGCAATGGAGAGGAATTTCCTGGACATGATGCTCTCTTCAGAGTTGGTTGTTGGCTTGGTGAGTGCAGAATTATTTTATGTGAATCAGAAGCTAAACACCGATTTCAGAAGTTACAACTTAATTTTCCAAGCCTATTTGTTATTGTTGCACCTAAGCGAACGGCCTGTAGTCGACACAAAATCGCCAACTGCCTGTAG | 4047 | 42.35 | MGVVIKLDIAKAFDTVDWDFLDEILKAKGFGQLWRKWIRGCISSANFSIIINGKPRGKIRASRGLRQGGPLSPFLFILVADCLSQMLQKAEQDSSIEGFWVGEGPQAIKITHLQFADDTILFSSPKTSCITNLFNAIRLFEAASGLSINCNKSEFLGLGMESQQAALLASMYGYKHGSWPTTYLGLPLHGNPRRYNFWTPVIEKSFTISSSLRRRQPSLLSPSSPSSLLVAPEAAAIFSKVAVESCPPTHLFLLQVAVFFFLTKWAWRFYHEPNALWRKIIGSKFGTVSNPLKMGEKSLNSSRGSWRAIHKSKYLIYDHIDIRVGKGDKTLFWEDNWLGSSPLQSKFPSLFNLSLKKDALIAELWEPTNGAWNLHLRRHLYDSEILEWALLSHQLSSFSFNNTEDTWVWNLEQNDYFSTGSLTQKLASQAYQSSNDLYGQLWKGLMPKKVKFFMWELSHKCINTADVIQRRFPNSSLSPSCCCSCNKAAESQIHIFSRCEYAASFWDHIQVAFGWQFARPGDVLSLLQFTLLGHPFKNDSKTPLPFPIPYRAPFDTKMSRRSSRLVEKAKEYLEKTTISETAKSSRTKRRGVSGGSHKSSRRNQKLKQNNEMKLNEVLSEQLEGKKRKTCSKSSVVTRAAASKNFVFEGIKKGGGRSMKRLYYQKVVFDGGEFEVGDDVYVKRREDASSDDEDPEVEECKVCFKSGEAIMIECDDCLGGFHLDCLKPPMKEVPEGDWICGFCEATKMGKEVQLPNPPEGKKRVRTMREKLLAGDLWAAHIERLWKEAIGIYQCKVRWYIIPEETAMGRQSHNLKRELYLTNDYADIEMESLLRLCQVMDPKDYNNAKEGDDIFLCEYEYDIRWHSFKRLAEIDKEDGEDSDRDWKLDQNADFDSDGDVEYEEERAQILQSRICSNTTHELAANSREGRFRGLQKIGAKKIPELIRCHKQTELERAKATLMLASLPKSLPCRNKEIEEITTFIESAICDDQCLGRCLYIHGVPGTGKTMSVLSVMRNLRAKVDAGHIRPHCFVEVNGLKLASPENIYRVIYEALTGHRVNWKKALQLLTKRFSDVKNCQEDDRPCILLIDELDLLVTRNQSVLYTILDWPTKPQAKLIVIGIANTMDLPEKLLPRISSRMGIKKLCFGPYNHQQLQEIILSRLEGIDAFEKQAIEFASRKVAAISGDARRALGICMCAAEIKDYHIKKLSLTSNNDMKAKTRVGIAEVEAAIQEMFQAPHIQVMKSCSKLSKIFLTAMVHELYKTGMGETTFEKVAMTILHLCTSNGEEFPGHDALFRVGCWLGECRIILCESEAKHRFQKLQLNFPSLFVIVAPKRTACSRHKIANCL | 1348 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 28163702 | 28177989 | - | Lag0015889.1 | Lac12g1517 | 590114 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g1517 | 1348 | ProSiteProfiles | BAH domain profile. | 743 | 870 | IPR001025 | GO:0003682(InterPro) | |
| Lac12g1517 | 1348 | Pfam | ATPase family associated with various cellular activities (AAA) | 997 | 1140 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
| Lac12g1517 | 1348 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 677 | 753 | IPR013083 | - | |
| Lac12g1517 | 1348 | Pfam | AAA lid domain | 1169 | 1204 | IPR041083 | - | |
| Lac12g1517 | 1348 | ProSiteProfiles | Zinc finger PHD-type profile. | 696 | 745 | IPR019787 | - | |
| Lac12g1517 | 1348 | FunFam | Origin recognition complex subunit 1 | 694 | 761 | - | - | |
| Lac12g1517 | 1348 | FunFam | Origin recognition complex subunit 1 | 1144 | 1236 | - | - | |
| Lac12g1517 | 1348 | SUPERFAMILY | DNA/RNA polymerases | 2 | 158 | IPR043502 | - | |
| Lac12g1517 | 1348 | ProSiteProfiles | Reverse transcriptase (RT) catalytic domain profile. | 1 | 188 | IPR000477 | - | |
| Lac12g1517 | 1348 | SMART | AAA_5 | 992 | 1145 | IPR003593 | GO:0016887(InterPro) | |
| Lac12g1517 | 1348 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 962 | 1204 | IPR027417 | - | |
| Lac12g1517 | 1348 | ProSitePatterns | Zinc finger PHD-type signature. | 699 | 742 | IPR019786 | - | |
| Lac12g1517 | 1348 | Gene3D | - | 766 | 928 | IPR043151 | - | |
| Lac12g1517 | 1348 | Gene3D | - | 948 | 1147 | IPR027417 | - | |
| Lac12g1517 | 1348 | SMART | BAH_4 | 730 | 870 | IPR001025 | GO:0003682(InterPro) | |
| Lac12g1517 | 1348 | Pfam | BAH domain | 779 | 868 | IPR001025 | GO:0003682(InterPro) | |
| Lac12g1517 | 1348 | Pfam | PHD-finger | 699 | 742 | IPR019787 | - | |
| Lac12g1517 | 1348 | PANTHER | CELL DIVISION CONTROL PROTEIN 6-RELATED | 748 | 1327 | IPR050311 | GO:0003688(PANTHER)|GO:0005664(PANTHER)|GO:0006270(PANTHER)|GO:0033314(PANTHER) | |
| Lac12g1517 | 1348 | Pfam | zinc-binding in reverse transcriptase | 433 | 506 | IPR026960 | - | |
| Lac12g1517 | 1348 | Pfam | Reverse transcriptase (RNA-dependent DNA polymerase) | 3 | 187 | IPR000477 | - | |
| Lac12g1517 | 1348 | SMART | PHD_3 | 698 | 743 | IPR001965 | - | |
| Lac12g1517 | 1348 | SUPERFAMILY | FYVE/PHD zinc finger | 685 | 747 | IPR011011 | - | |
| Lac12g1517 | 1348 | FunFam | Origin recognition complex subunit 1 | 949 | 1147 | - | - | |
| Lac12g1517 | 1348 | MobiDBLite | consensus disorder prediction | 577 | 613 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g1517 | Lac-Chr12:28163702 | Lac6g0991 | Lac-Chr6:9016929 | 2.40E-214 | dispersed | |
| Lac7g1221 | Lac-Chr7:11321229 | Lac12g1517 | Lac-Chr12:28163702 | 1.30E-54 | dispersed | |
| Lac9g2413 | Lac-Chr9:43218926 | Lac12g1517 | Lac-Chr12:28163702 | 1.30E-13 | dispersed | |
| Lac11g1399 | Lac-Chr11:23043594 | Lac12g1517 | Lac-Chr12:28163702 | 1.80E-06 | transposed | |
| Lac12g2551 | Lac-Chr12:42405691 | Lac12g1517 | Lac-Chr12:28163702 | 1.40E-53 | transposed | |
| Lac1g0135 | Lac-Chr1:2487987 | Lac12g1517 | Lac-Chr12:28163702 | 7.90E-64 | wgd | |
| Lac10g1970 | Lac-Chr10:26877603 | Lac12g1517 | Lac-Chr12:28163702 | 3.90E-65 | wgd | |
| Lac11g1241 | Lac-Chr11:17626953 | Lac12g1517 | Lac-Chr12:28163702 | 2.60E-73 | wgd | |
| Lac12g1517 | Lac-Chr12:28163702 | Lac13g1537 | Lac-Chr13:15841175 | 3.10E-73 | wgd | |
| Lac12g1517 | Lac-Chr12:28163702 | Lac2g2588 | Lac-Chr2:39414483 | 4.80E-06 | wgd | |
| Lac12g1517 | Lac-Chr12:28163702 | Lac3g2713 | Lac-Chr3:42346504 | 8.20E-41 | wgd | |
| Lac12g1517 | Lac-Chr12:28163702 | Lac3g2571 | Lac-Chr3:38992731 | 4.10E-81 | wgd | |
| Lac12g1517 | Lac-Chr12:28163702 | Lac4g0997 | Lac-Chr4:24744138 | 6.30E-66 | wgd | |
| Lac12g1517 | Lac-Chr12:28163702 | Lac4g0540 | Lac-Chr4:12233582 | 4.80E-74 | wgd | |
| Lac12g1517 | Lac-Chr12:28163702 | Lac6g1524 | Lac-Chr6:19596089 | 6.70E-61 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23070 | PF00078 | RVT_1 | 4.70E-29 | CL0027 | Lac | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g1517 | K02603 | - | csv:101214082 | 1271.53 |