Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1654 ATGGAGTCAGGTTCTTTTGATCAGAACATCAGGGGATTGCCCACTCATGGCGGTCGATACATTCAATACAATGTCTATGGGAATCTATTTGAAGTTTCTAGGAAGTATATTCCACCAATAAGGCCTGTTGGAAGAGGAGCTTATGGTATTGTCTGTGCTGCTTTGAATTCAGAAACAAATGAGGAGGTTGCAATTAAGAAGGTTGGCAAAGCATTTGACAATAGAATTGATGCTAAAAGAACCTTGCGAGAAATCAAGCTTCTTCGACACATGGATCATGAAAATATTATTGCTCTTAAAGATATTATAAGACCTCCTCAGGAGGAGAATTTCAATGATGTGTACCTTGTTTATGAATTGATGGATACCGATCTAAATCAGATAATACGGTCCAACCAATCGTTGACTGATGATCATTGCCGGTACTTTCTATACCAGTTGTTACGAGGGCTCAAGTACATACATTCTGCTAATGTTCTGCATCGTGATCTGAAACCTAGCAATTTGTTCCTCAATGCAAATTGTGACCTGAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACTGATTTTATGACCGAGTACGTTGTTACTCGTTGGTATCGTGCACCGGAATTGCTACTTAATTGTTCAGAATACACTGGAGCAATAGATATTTGGTCTGTTGGCTGTATACTTGGTGAAATTATGCACAGACAACCACTGTTTCCTGGAAGAGATTATGTCCATCAGCTAAAACTTATTACTGAGCTCATTGGATCACCCGACGACTCGAGCCTCGGATTCTTACGCAGTGACAATCCACGAAGATATTTTAGACATCTTCCCCACTTCCCCAGGCAACAGTTTTCCACTAGATTTCCTACCATGTCTCCCGCTGCTATCGACTTGCTTGAGAAGATGCTTGTCTTTGATCCTACTAAGCGCATTACAGTTGATGAGGCGCTGTGTCATCCATACTTAGCACCCCTTCATGATATCAATGAGGAGCCAGTATGTCCAATGCCTTTCAGTTTTGATTTCGAGCAACCGTCGTACACCGAAGAAAACATCAAGGAACTTGTATGGAGAGAATCTGTGAGGTTCAACCCGGATCCCGCTTATTGA 1113 41.6 MESGSFDQNIRGLPTHGGRYIQYNVYGNLFEVSRKYIPPIRPVGRGAYGIVCAALNSETNEEVAIKKVGKAFDNRIDAKRTLREIKLLRHMDHENIIALKDIIRPPQEENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRYFLYQLLRGLKYIHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIMHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPRQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVDEALCHPYLAPLHDINEEPVCPMPFSFDFEQPSYTEENIKELVWRESVRFNPDPAY 370
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 31883864 31888686 + Lag0016026.1 Lac12g1654 590251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1654 370 ProSiteProfiles Protein kinase domain profile. 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1654 370 CDD STKc_TEY_MAPK 30 366 - -
Lac12g1654 370 ProSitePatterns Serine/Threonine protein kinases active-site signature. 159 171 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g1654 370 SMART serkin_6 37 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1654 370 FunFam Mitogen-activated protein kinase 121 350 - -
Lac12g1654 370 Gene3D Phosphorylase Kinase; domain 1 20 360 - -
Lac12g1654 370 FunFam Mitogen-activated protein kinase 22 131 - -
Lac12g1654 370 ProSitePatterns Protein kinases ATP-binding region signature. 43 67 IPR017441 GO:0005524(InterPro)
Lac12g1654 370 Pfam Protein kinase domain 41 323 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1654 370 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 30 359 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lac12g1654 370 SUPERFAMILY Protein kinase-like (PK-like) 40 330 IPR011009 -
Lac12g1654 370 Gene3D Transferase(Phosphotransferase) domain 1 121 350 - -
Lac12g1654 370 ProSitePatterns MAP kinase signature. 72 175 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1654 Lac-Chr12:31883864 Lac6g0769 Lac-Chr6:6538774 3.40E-163 dispersed
Lac11g2057 Lac-Chr11:36366671 Lac12g1654 Lac-Chr12:31883864 4.20E-185 transposed
Lac5g2093 Lac-Chr5:39574639 Lac12g1654 Lac-Chr12:31883864 1.30E-117 transposed
Lac6g0444 Lac-Chr6:3627440 Lac12g1654 Lac-Chr12:31883864 2.10E-115 transposed
Lac1g1194 Lac-Chr1:30826377 Lac12g1654 Lac-Chr12:31883864 2.80E-11 wgd
Lac12g1654 Lac-Chr12:31883864 Lac7g2604 Lac-Chr7:44458702 9.20E-169 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85812 PF00069 Pkinase 1.20E-71 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1654 K20600 - csv:101215189 733.021