Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1661 ATGGGCTTTCCGGTGGGTTGCACGGAGGTGTTCTTCCCGACCGTATTCCTCCACTTCCTCTCCCTCCTCGACTTCCTCAAACGCCTAATTCTCTCCCTCTTCCGCCTCCTCGGCCTCCCGGAGTTTCTCCACTCCTCCGACGCCCTCCCGCCGGACCTCCGCTTCCCTCTCAACCCGCCGCCCTCCGCCCTCCTCCTCCGCGAATTCCTCCCCGTCGTGAAATTCTCCGATCTCCCCCACCTCTCCGGCGGCGGCGAGAGCTGCGCTGTCTGCCTGTACGACTTCGAGGGCGGCGAGGAGATCCGGTGGCTGACCAACTGCAGGCACATATTCCACCGGGGGTGTGTGGACCGTTGGATGGATCACGACCAGAAGACGTGTCCGCTCTGTAGAACGCCGTTCGTGCCGGATGGGATGATGGACGAGTTCAATCAACGCCTCTGGGCCGCCTCTGGCGTCGCTGAGTTTGACTCCGAGTTCAACTCGGTTTTAGGTTAG 498 62.25 MGFPVGCTEVFFPTVFLHFLSLLDFLKRLILSLFRLLGLPEFLHSSDALPPDLRFPLNPPPSALLLREFLPVVKFSDLPHLSGGGESCAVCLYDFEGGEEIRWLTNCRHIFHRGCVDRWMDHDQKTCPLCRTPFVPDGMMDEFNQRLWAASGVAEFDSEFNSVLG 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32106630 32107127 + Lag0016033.1 Lac12g1661 590258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1661 165 SUPERFAMILY RING/U-box 87 137 - -
Lac12g1661 165 Pfam Ring finger domain 87 131 IPR001841 -
Lac12g1661 165 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 137 IPR013083 -
Lac12g1661 165 ProSiteProfiles Zinc finger RING-type profile. 88 131 IPR001841 -
Lac12g1661 165 SMART ringv_2 87 131 IPR011016 GO:0008270(InterPro)
Lac12g1661 165 FunFam RING-H2 finger protein ATL73 66 138 - -
Lac12g1661 165 PANTHER RING ZINC FINGER PROTEIN-RELATED 10 141 - -
Lac12g1661 165 SMART ring_2 88 130 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1661 Lac-Chr12:32106630 Lac7g0223 Lac-Chr7:1758530 2.50E-33 dispersed
Lac12g1661 Lac-Chr12:32106630 Lac11g2067 Lac-Chr11:36505429 2.10E-40 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1661 K16281 - csv:101220424 267.7