Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1666 ATGGCTTCTCTTCCTCGAAAGCAAGCAATCCATGGCAGCTTTCTGCTTCTTCTCCTCTTCCTCTCTCTCCCATCTCTGTCCGTCGCTGTCACTAAAGCCGAAGCTTCGTATATCGCTATTCGCCAACTCCATGCTTTGAGAGAACACGATGAGCTCCCAGATGACTACAAATACGAACTCGACATTCCCGACACTTTTCCACATGAGAGGTTGAAGAAGGCTTATGTTGCCCTTCAAGCTTGGAAAGGGGCCATCTATTCTGACCCTAAGAACATCACTGCCAATTGGGTTGGGGCTGATGTCTGCTCTTACACTGGCGTTTTTTGTGCTCCGGCGCTTGATGACTCCAAGATTGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGCTATTTCCCGCCAGAGTTTGGCCTCTTGACGGATTTAGCTTTGGTACATATCAACTCCAATAGGTTTTGTGGGATCATTCCAACTAGCTTTTCTAAGCTCACTCTCATGTACGAGTTTGATATCAGTAACAACCGCTTCGTGGGCAAATTCCCTGAGGCTGTCCTCGAGTGGCCGAACGCTCAGTACCTCGATCTCAGGTACAACGAGTTCGAAGGAGAAATCCCATGGTCACTCTTCACAAAAACGTACGACGTCATATTCATAAACAACAACAGATTCACATCCCAAATCCCGGAAAGCATTGGAAACTCCACCGTCTCCATCCTCAACTTCGCCAACAACGAGTTCTATGGCTGCATTCCCAAAAGCATCGGCCAGATGACCTACCTCAAACAGCTCCTCTTCATTGGCAATAAGCTCGGCGGCTGTGTCCCGGCAGAGATGGGAAACCTCGTCAATCTGACAGTACTCGACCTCAGCTTCAATGGCCTCATTGGCGAACTGCCAACATCCATTTCGGGGCTGAAGAATTTGGAGGTTGTGGACATCAGTTACAATGAATTTAGGGGTTCTGTTTCTAGGGAGCTCTGCGAATTGCCCAAGTTGGAGAACTTCACCGTCGCATTTAATTATTTTGATGAAGTAGATCCAAACTGTATTAGGCCTAAGGGATCCAAGAAACTTTTTGATGATGCACAAAATTGTTTGACAAATCGACCGGAGCAGAGAGATGAGGACAAATGTTACTCTCTTTTGAAGAACACAGTGGATTGTGCTGGAATCTGTCGTGAGAATCCACACGGAAAGTTTTCAATACCCAGCGATAGGTCGCCAACTGAATCGGTTGACACCCCTGTTCCAGAAGTTGGCTCTCCACCATCTCCATCTGAATCCTCAGTTCCATCCACCCCAGATGCTCAACCTCCACCGGTCCACTCTCCACCTCCACCAGTTTACTCCCCACCACCACCCGTCCACTCCCCTCCACCACCGGTCTACTCTCCACCACCCCCCGTCCACTCCCCACCACCCCCAGTCTACTCCCCGCCACCACCGGTCCACTCCCCACCACCACCAGTCTACTCCCCGCCACCACCGGTCCACTCCCCACCACCACCAGTCTACTCGCCACCACCACCAGTCCACTCCCCGCCACCCCCTGTCCACTCTCCCCCACCACCGGTCTTCTCCCCCCCACCACCCCCTATCCACTCTCCCCCACCACCACCGGTCCATTCCCCACCACCACCGATCTACTCTCCACCACCACCGGTCTACTCCCCACCACCACCAACCGCATCTCCTCCTCCTCCCGGTGCTCCTCCACCGCCGTCGTTCGAGGAAGTCATCCTCCCACCAAATATCGGCTTCCAATACGCATCGCCACCTCCACCATTGTTCCCTGGCTATTGA 1812 52.26 MASLPRKQAIHGSFLLLLLFLSLPSLSVAVTKAEASYIAIRQLHALREHDELPDDYKYELDIPDTFPHERLKKAYVALQAWKGAIYSDPKNITANWVGADVCSYTGVFCAPALDDSKIEVVAGIDLNHGDIAGYFPPEFGLLTDLALVHINSNRFCGIIPTSFSKLTLMYEFDISNNRFVGKFPEAVLEWPNAQYLDLRYNEFEGEIPWSLFTKTYDVIFINNNRFTSQIPESIGNSTVSILNFANNEFYGCIPKSIGQMTYLKQLLFIGNKLGGCVPAEMGNLVNLTVLDLSFNGLIGELPTSISGLKNLEVVDISYNEFRGSVSRELCELPKLENFTVAFNYFDEVDPNCIRPKGSKKLFDDAQNCLTNRPEQRDEDKCYSLLKNTVDCAGICRENPHGKFSIPSDRSPTESVDTPVPEVGSPPSPSESSVPSTPDAQPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVYSPPPPVHSPPPPVHSPPPPVFSPPPPPIHSPPPPPVHSPPPPIYSPPPPVYSPPPPTASPPPPGAPPPPSFEEVILPPNIGFQYASPPPPLFPGY 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 32195417 32197228 - Lag0016038.1 Lac12g1666 590263
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1666 603 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Lac12g1666 603 Gene3D Ribonuclease Inhibitor 239 388 IPR032675 -
Lac12g1666 603 Gene3D Ribonuclease Inhibitor 73 238 IPR032675 -
Lac12g1666 603 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 15 521 IPR051582 -
Lac12g1666 603 MobiDBLite consensus disorder prediction 400 603 - -
Lac12g1666 603 Pfam Leucine rich repeat N-terminal domain 77 109 IPR013210 -
Lac12g1666 603 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Lac12g1666 603 Pfam Leucine Rich Repeat 194 211 IPR001611 GO:0005515(InterPro)
Lac12g1666 603 PRINTS Proline rich extensin signature 406 422 - -
Lac12g1666 603 PRINTS Proline rich extensin signature 436 457 - -
Lac12g1666 603 PRINTS Proline rich extensin signature 457 473 - -
Lac12g1666 603 PRINTS Proline rich extensin signature 474 491 - -
Lac12g1666 603 MobiDBLite consensus disorder prediction 421 582 - -
Lac12g1666 603 SUPERFAMILY L domain-like 75 362 - -
Lac12g1666 603 Pfam Leucine rich repeat 286 344 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1666 Lac-Chr12:32195417 Lac4g0561 Lac-Chr4:12624701 3.30E-06 dispersed
Lac12g1666 Lac-Chr12:32195417 Lac2g0269 Lac-Chr2:2033572 4.50E-48 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1666 - - - 0.0