Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g1712 | ATGGACGTGGGATTGGCGTTGGTTATTGTAACGGCCGTAACGGCGTATCTGCTATGGTTCACGTTCATTTCACGGTCCTTAAAAGGCCCTCAAATGTGGCCATTACTCGGCAGCCTCCCCGGACTCATCGAGAATTGCGACCGTTTACACGACTGGATCTCCGACAACCTCCGCGCCTGCGGCGGCACCTACCAGACCTGCATCTGGGCCTTCCCTTTCTTCGCCACTAAACACGGCCTCGTCACCGTCACCTGCGACCCCAGAAACCTCGAGCACATTCTCAAGACCCGTTTCGACAATTACCCCAAGGGACCCACTTGGCAAGCCGTTTTTCACGACCTCCTCGGCCAGGGCATCTTCAACTCCGACGGTGACACCTGGCTCTTCCAGAGAAAAACTGCCGCCTTGGAATTTACCACTAGGACCCTCCGCCAAGCCATGGCTCGCTGGGTCACCCGAGCCATTAAGCTTCGATTTTGCCCTATTCTCCAGGAAGCCGAGCGAAATTCTAAGCCGCTTGATCTTCAGGATGTGTTGCTACGCCTTACTTTTGATAACATCTGCGGCTTGGCCTTCGGGAAGGACCCCATGACTTGCGCGCCGGGTTTCCCCGAGAACGGCTTCGCCACGGCTTTCGACCGAGCCACCGAGGCTTCCTTGCAACGCTTCATTTTGCCCGAAGTGCTTTGGAAATTCAAGAAGTGGCTCCGCCTTGGAATGGAGGTCAGCTTGAGCCGGAGCCTCGTCCATATTGAGGACTACTTATCCACTGTCATCGACTCACGTAAGCTCGAGTTGATGAATCACCCTAAAGACTCCACCCCACACGACGATTTATTGTCGCGTTTCATGAAGAAGAAGGAAAGTAACTACTCCAACGCCTTCCTCCGTCACGTGGCCCTTAATTTCATCCTAGCTGGACGGGACACGTCATCCGTCGCGCTGAGCTGGTTTTTCTGGTTGGTGACATTAAACCCACTCGTAGAGGAAAAAATCCTCCGTGAGATCTGCACCGTTCTGATTGAGACACGTGGCAATAACATCCCATCGTGGCTAGACGAGCCGTTAGGGTTCGAAGAGATCGACCGTCTGATTTATCTCAAAGCCGCTCTCACCGAAACCCTAAGACTGTACCCGTCCGTGCCGGAGGATTCGAAGCACGTCGTCGCCGACGACGTTCTGCCGGACGGTACCTTCGTTCCGGCGGGTTCGTCGGTGACTTATTCGATCTACTCCACCGGAAGAATGAAGTCGACTTGGGGAGAGGACTGCCTCGAATTCCGGCCGGAGCGGTGGCTGACGGCGGATGGTAAGAAATTCATTCCGTACGATTCGTACAAATTCGTAGCGTTCAATGCAGGGCCGAGGATCTGTTTGGGGAAGGATTTGGCGTATTTACAGATGAAGTCGATCGCGGCGGCGGTGCTGCTCCGGCACCGGCTGACGGTGGCGGCGGGGCATAAGGTGGAGCAGAAAATGTCGTTGACGCTGTTTATGAAGTACGGGCTGAAGGTGAACGTTCACCGGAGGGACTTGGAGGGGATCGTCGAAAGTATCAGGGGCAAAAACGGAATTTCGCAAGGGATAGATGCTCCGTTAATCGCCGTTGTGAACTGTAACGGCGGATGTAACGGAGTAAACGAAGTATAA | 1650 | 54.42 | MDVGLALVIVTAVTAYLLWFTFISRSLKGPQMWPLLGSLPGLIENCDRLHDWISDNLRACGGTYQTCIWAFPFFATKHGLVTVTCDPRNLEHILKTRFDNYPKGPTWQAVFHDLLGQGIFNSDGDTWLFQRKTAALEFTTRTLRQAMARWVTRAIKLRFCPILQEAERNSKPLDLQDVLLRLTFDNICGLAFGKDPMTCAPGFPENGFATAFDRATEASLQRFILPEVLWKFKKWLRLGMEVSLSRSLVHIEDYLSTVIDSRKLELMNHPKDSTPHDDLLSRFMKKKESNYSNAFLRHVALNFILAGRDTSSVALSWFFWLVTLNPLVEEKILREICTVLIETRGNNIPSWLDEPLGFEEIDRLIYLKAALTETLRLYPSVPEDSKHVVADDVLPDGTFVPAGSSVTYSIYSTGRMKSTWGEDCLEFRPERWLTADGKKFIPYDSYKFVAFNAGPRICLGKDLAYLQMKSIAAAVLLRHRLTVAAGHKVEQKMSLTLFMKYGLKVNVHRRDLEGIVESIRGKNGISQGIDAPLIAVVNCNGGCNGVNEV | 549 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 32960627 | 32962276 | + | Lag0016084.1 | Lac12g1712 | 590309 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g1712 | 549 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 451 | 460 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac12g1712 | 549 | PANTHER | CYTOCHROME P450 | 18 | 503 | - | - | |
| Lac12g1712 | 549 | FunFam | Cytochrome P450 | 21 | 513 | - | - | |
| Lac12g1712 | 549 | Pfam | Cytochrome P450 | 28 | 496 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | P450 superfamily signature | 458 | 469 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | P450 superfamily signature | 369 | 380 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | P450 superfamily signature | 306 | 323 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | P450 superfamily signature | 449 | 458 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | Gene3D | Cytochrome P450 | 24 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | E-class P450 group I signature | 315 | 341 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | E-class P450 group I signature | 368 | 386 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | E-class P450 group I signature | 295 | 312 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | E-class P450 group I signature | 448 | 458 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | PRINTS | E-class P450 group I signature | 458 | 481 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | SUPERFAMILY | Cytochrome P450 | 21 | 510 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1712 | 549 | CDD | CYP86A | 67 | 503 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac10g2292 | Lac-Chr10:35052758 | Lac12g1712 | Lac-Chr12:32960627 | 6.20E-36 | dispersed | |
| Lac12g1712 | Lac-Chr12:32960627 | Lac4g2600 | Lac-Chr4:45092971 | 7.10E-125 | dispersed | |
| Lac11g2077 | Lac-Chr11:36645245 | Lac12g1712 | Lac-Chr12:32960627 | 3.70E-235 | transposed | |
| Lac7g2817 | Lac-Chr7:47278181 | Lac12g1712 | Lac-Chr12:32960627 | 2.20E-189 | transposed | |
| Lac10g2280 | Lac-Chr10:34857255 | Lac12g1712 | Lac-Chr12:32960627 | 4.70E-49 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g1712 | K15398 | - | csv:101221526 | 1032.32 |