Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g1743 | ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCTCAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGCAACAATGTTGGATCAGGGATGCCAATGGAGCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGAGCTCCATCCGGTGGAGTGGTTGCCAGTGAGCCGGTGAAAAGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCATCTGCTCCAAATCCAGCCACTGTAGCTTCTTCCCCGAAGCGGGGAAGAGGACGGCCTCCCGGGTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTGAAACACTTTCTGGGTCAGCTGGTATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGCTGCCAAAATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTAACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTTGAGATAATATGTCTGTCAGGCTCATACGCTCTTGGAGAAACTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCTCTTGCCAGCCCTGATGGTCGTGTTATCGGCGGTGGAGTAGGAGGAGCACTTATCGCTGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGTCAAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATAGACTCGGATCATCAGGCGGTAGATCACGCAGTGGCAATTGCGAGCGTGCAGCAGAATCAGAATCTGACTCCGACCTCCTCAGTTAGTATGTGGCCGTCCTCGCAGTCTCTGGACATGCGCAATGCCCACATTGACATCGATCTGATGCGCGGTTGA | 1005 | 52.04 | MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGMPMEPNPAISPYGGNVGAPSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPATVASSPKRGRGRPPGSGKKQQLASLGETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGETAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQAVDHAVAIASVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG | 334 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 33386702 | 33389554 | + | Lag0016115.1 | Lac12g1743 | 590340 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g1743 | 334 | PRINTS | AT-hook-like domain signature | 83 | 93 | IPR017956 | GO:0003677(InterPro) | |
Lac12g1743 | 334 | PRINTS | AT-hook-like domain signature | 117 | 128 | IPR017956 | GO:0003677(InterPro) | |
Lac12g1743 | 334 | ProSiteProfiles | PPC domain profile profile. | 145 | 286 | IPR005175 | - | |
Lac12g1743 | 334 | PANTHER | AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 | 44 | 317 | IPR039605 | GO:0003680(InterPro) | |
Lac12g1743 | 334 | CDD | DUF296 | 150 | 264 | IPR005175 | - | |
Lac12g1743 | 334 | SMART | AT_hook_2 | 83 | 95 | IPR017956 | GO:0003677(InterPro) | |
Lac12g1743 | 334 | SMART | AT_hook_2 | 119 | 131 | IPR017956 | GO:0003677(InterPro) | |
Lac12g1743 | 334 | FunFam | AT-hook motif nuclear-localized protein 1-like | 151 | 281 | - | - | |
Lac12g1743 | 334 | Gene3D | - | 151 | 284 | - | - | |
Lac12g1743 | 334 | MobiDBLite | consensus disorder prediction | 11 | 52 | - | - | |
Lac12g1743 | 334 | MobiDBLite | consensus disorder prediction | 98 | 114 | - | - | |
Lac12g1743 | 334 | MobiDBLite | consensus disorder prediction | 1 | 135 | - | - | |
Lac12g1743 | 334 | Pfam | Plants and Prokaryotes Conserved (PCC) domain | 151 | 264 | IPR005175 | - | |
Lac12g1743 | 334 | SUPERFAMILY | AF0104/ALDC/Ptd012-like | 149 | 274 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2099 | Lac-Chr11:36906405 | Lac12g1743 | Lac-Chr12:33386702 | 7.60E-76 | dispersed | |
Lac12g1743 | Lac-Chr12:33386702 | Lac2g0053 | Lac-Chr2:418593 | 1.50E-61 | dispersed | |
Lac12g1743 | Lac-Chr12:33386702 | Lac6g0075 | Lac-Chr6:678997 | 7.20E-64 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g1743 | - | - | - | 0.0 |