Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1743 ATGGATCGAAGGGATCCGATGGCGTTATCGGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCTCAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGCAACAATGTTGGATCAGGGATGCCAATGGAGCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGAGCTCCATCCGGTGGAGTGGTTGCCAGTGAGCCGGTGAAAAGGAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCATCTGCTCCAAATCCAGCCACTGTAGCTTCTTCCCCGAAGCGGGGAAGAGGACGGCCTCCCGGGTCGGGAAAGAAGCAACAATTGGCTTCTCTTGGTGAAACACTTTCTGGGTCAGCTGGTATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGCTGCCAAAATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTAACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATATGAGGGGCGTTTTGAGATAATATGTCTGTCAGGCTCATACGCTCTTGGAGAAACTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCTCTTGCCAGCCCTGATGGTCGTGTTATCGGCGGTGGAGTAGGAGGAGCACTTATCGCTGCAACCCCGGTTCAGGTGATAGTAGGGAGCTTCATGTGGGGCAGTTCAAAGTCAAAGTACAAGAAGAGGGAAGCTATTGAAGGCGTGATAGACTCGGATCATCAGGCGGTAGATCACGCAGTGGCAATTGCGAGCGTGCAGCAGAATCAGAATCTGACTCCGACCTCCTCAGTTAGTATGTGGCCGTCCTCGCAGTCTCTGGACATGCGCAATGCCCACATTGACATCGATCTGATGCGCGGTTGA 1005 52.04 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGMPMEPNPAISPYGGNVGAPSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSAPNPATVASSPKRGRGRPPGSGKKQQLASLGETLSGSAGMGFTPHVITIGIGEDVAAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGETAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAIEGVIDSDHQAVDHAVAIASVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33386702 33389554 + Lag0016115.1 Lac12g1743 590340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1743 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Lac12g1743 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Lac12g1743 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Lac12g1743 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Lac12g1743 334 CDD DUF296 150 264 IPR005175 -
Lac12g1743 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Lac12g1743 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Lac12g1743 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Lac12g1743 334 Gene3D - 151 284 - -
Lac12g1743 334 MobiDBLite consensus disorder prediction 11 52 - -
Lac12g1743 334 MobiDBLite consensus disorder prediction 98 114 - -
Lac12g1743 334 MobiDBLite consensus disorder prediction 1 135 - -
Lac12g1743 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Lac12g1743 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2099 Lac-Chr11:36906405 Lac12g1743 Lac-Chr12:33386702 7.60E-76 dispersed
Lac12g1743 Lac-Chr12:33386702 Lac2g0053 Lac-Chr2:418593 1.50E-61 dispersed
Lac12g1743 Lac-Chr12:33386702 Lac6g0075 Lac-Chr6:678997 7.20E-64 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1743 - - - 0.0