Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1767 ATGTTGTTTTTCAACCTTCAACGCATCCTTCGTTTTTTGAGATTAACCTTCCAAATCTCTCAAATTGGTGACACAGCCCACTTTGAATTCTGTAGGTCCAATCTCTCCCTAAAAGTCTCCCACATTTCCCCTCACTTCATTGCAGAACTACGAATTCAATCTCTCTTCTTCGCCTATTACTTAACTGATGATTCACTGGATCATCATTGGACGATTTCGCTCAAGCAATTGTGCAATCATGTGAGAGACGGCATGTTTGCTTCTTCATTGGTCTTCTCTCTTACCAACGAAACCCCACCTCACGCACTCATTACATTTCAGACTTCATTGGAAGATTTCGCTCGAGCAGTTTTGCAATCATCCACTTCTGAGCTGGAAGATTTGTATCATCGTAAGATGATGTTGTCACATCTAGAAGATCAGCATAATGTAGGCGACTTTAACTATCAAACTTTTTGCATAGTTCCTTCACAAGAGTTCAAGGACATTGTAATAGAGTTTAGAAATATTTCCCCAGTTACTGTTACTTTGACGGATTCACAAGTGAAGTTTTCAAATACGGCATCCAACAAAGAGATTATTCTTACTGAAGCGGAAAGACGATGTACGATTACTATTCAAGCTGGGGAAGAAGTTCAGTTCCTAATCACGTTCCATCCCGCGACGTTTTTTCATGATTTGACATCTTTTGCTGAAACGGTTTCAAATATCAGTCCATCATCAGAGAGGAATATAACTCACATCTTCCCATATGGTGCAGTAGAGATCAGGAGCCCTGATTCTGACAAGACTTTTAAAGTGAATGGGCATCGACTCAAGATCTTGCACGAGGGTGAGTGTATTGCAGAGCTTGGGATTGTCGAGCTAGTTCTTTCGGACTATGAGGCGATGGAGTTGAACACTGATACGATCATAAGGAACGAGATGGTGACCTGTGGGAAAAAGAATGAAGGGAAGTTGTTCTCCCCTGCACTGATCACAAAATTATGCAGGAAGATAGTGGAGAAAGGATACACCGAGTTGGAGAATGATAGTCTTTCTCAAGCACAAAGGGATGGTTTGAGAGACTCAAGAAAGAGAGACAAGAAGGCTCTCTATCTAATCTATCAAGGATTAGATGACGATGCTTTTGAGAAGATTTCAGAAGCAAAGACAGCGAAAGAAGCATGGGAGAAGCTTCAACCATCATACAAGGGAGCGGATCCCGTCAAGAAGGTACGTCTTCAAACTTTAAAAGCTGAGTTTGAAACATTGAATATGAAAGAAGGGGAAGCCATCTCCGACTATTTTTCTAGAGTTTTAACGGTCACCAATCAACTTAAGAAGAATGGTGAAAAGCTTGATGATGTAAAAATCATGGAGAAAATATAA 1371 40.63 MLFFNLQRILRFLRLTFQISQIGDTAHFEFCRSNLSLKVSHISPHFIAELRIQSLFFAYYLTDDSLDHHWTISLKQLCNHVRDGMFASSLVFSLTNETPPHALITFQTSLEDFARAVLQSSTSELEDLYHRKMMLSHLEDQHNVGDFNYQTFCIVPSQEFKDIVIEFRNISPVTVTLTDSQVKFSNTASNKEIILTEAERRCTITIQAGEEVQFLITFHPATFFHDLTSFAETVSNISPSSERNITHIFPYGAVEIRSPDSDKTFKVNGHRLKILHEGECIAELGIVELVLSDYEAMELNTDTIIRNEMVTCGKKNEGKLFSPALITKLCRKIVEKGYTELENDSLSQAQRDGLRDSRKRDKKALYLIYQGLDDDAFEKISEAKTAKEAWEKLQPSYKGADPVKKVRLQTLKAEFETLNMKEGEAISDYFSRVLTVTNQLKKNGEKLDDVKIMEKI 456
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 33776673 33780931 + Lag0016139.1 Lac12g1767 590364

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1767 456 PANTHER OS04G0629600 PROTEIN 330 456 - -
Lac12g1767 456 Pfam gag-polypeptide of LTR copia-type 358 453 - -
Lac12g1767 456 Gene3D - 1 245 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1767 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2175 Lac-Chr10:32640045 Lac12g1767 Lac-Chr12:33776673 3.60E-09 dispersed
Lac12g1767 Lac-Chr12:33776673 Lac6g2249 Lac-Chr6:39487689 1.50E-27 dispersed
Lac12g1765 Lac-Chr12:33764493 Lac12g1767 Lac-Chr12:33776673 3.30E-64 proximal
Lac12g1767 Lac-Chr12:33776673 Lac12g1768 Lac-Chr12:33830126 2.60E-88 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g466 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00565 Cam06g0605 Cec06g0605 Cco06g0610 Clacu06g0591 Cmu06g0586 Cre06g1352 . Cone15ag0822 . Cone4ag0228 . . . . . . . Bda13g00133 . . . . . . . . . . . Cpe12g00208 . Bhi12g01826 . . Lac12g1767 . . . . . . . . . . Lsi09g01336 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012158 0 0 0 0 0 2 0 3 2 1 2 3 1 0 1 0 3 0 0 2 1 0 0 3 1 2 0 0 1 0 28