Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1799 ATGAGTTTTGGGGGTTTCCTCGACGGCGGCGGCGGCGGCGGTGGAGGAGGCGGTGGTGCTCGAATCGTAGCCGATTTACCTTACGCGAACAGCAACAGCGCTACCGCTAACAATAACCCCACCGGCGGCATCGGCGGCGGAAATATGCCAACCGGCGCAATCGCTCCGCCGCGCTTAATCACTCAATCTCTCACCAAATCGATGTTTAACTCTCCCGGACTCTCTCTCGCTCTTACGAACATGGACGGCGGGCAAGGGGATTTGGCTGCCCGGCTGCCCGAGGGTTTCGAGCATAATGTTGGAAGAAGAGGCAGAGAGGATGAGCATGAGAGTAGATCTGGAAGTGACAACATGGACGGCGGCTCCGGCGACGACCAGGACGCCGCCGACAATCCTCCGAGGAAGAAGCGTTACCACCGACACACTCCTCAGCAAATCCAAGAGCTCGAAGCTGTTTTTAAAGAGTGCCCTCATCCTGATGAGAAGCAACGGCTCGAGTTGAGTCGGAGGCTGTGTTTAGAAACCAGGCAAGTTAAGTTTTGGTTCCAAAATCGGAGGACTCAAATGAAGACCCAATTGGAACGCCATGAGAATACCTTGCTTAGACAGGAGAATGATAAGCTCAGAGCTGAGAATATGTCAATTCGAGATGCTATGAGGAATCCTATCTGTTCGAACTGTGGCGGTCCAGCGATTATTGGGGAGATTTCGCTGGAAGAGCAGCAGTTGAGGATCGAAAATGCTCGGTTGAAGGATGAGTTGGACCGGGTTTGTGCGCTCGCTGGGAAGTTTCTCGGCAGACCGATTTCGTCGCTGGCTAACTCCATTGCACCTCCATTGCCAAGCTCGAGTCTGGAACTGGGAGTTGGGAGTAATGGATTTGGGAGTTTGACCATGGCAACGTCAATGCCTATCGGGCCGGATTTTGGAGGTGGGTTGTCTGGTAATCTGGCTGTTGTTCCGCCACCTGCGAGGTCTACGCCGGGGATGGGACTTGATCGGTCGGTCGAGCGATCTATGCTACTGGAGCTTGCTTTGGCTGCCATGGATGAATTGGTTAAAATGGCTCAGACTGATGAGCCTCTTTGGATTGGGAGCTTGGAAGGTGGAAGAGAAATACTGAACCAGGAAGAGTACATGAGGACATTCACTCCTTGCATCGGCATGAAACCGAATGGTTTCGTCACTGAGGCGTCTAGAGAAACTGGAATGGTGATCATCAACAGCTTGGCTCTCGTCGAGACATTGATGGACTCGAATCGATGGGCGGAGATGTTTCCGTGTATGATCGCTCGAACAACGACCACTGATGTGATCTCTGGTGGCATGGGTGGAACGAGGAACGGTGCACTTCAACTGATGCACGCAGAGCTTCAAGTGCTCTCGCCGTTGGTACCGGTACGGGAGGTAAATTTTCTCCGGTTCTGCAAGCAGCATGCCGAAGGGGTTTGGGCAGTCGTCGACGTATCGGTCGACGCCATGAGAGAGACTCCAACAGGCGCCTCCTCATTCATCAACTGCAGAAGGCTTCCTTCTGGATGTGTTGTTCAAGATATGCCCAATGGATATTCCAAGGTTACGTGGGTGGAACATGCAGAGTATGATGATAGCCAAGTTCACCAGCTCTATCGGCCTCTTCTCAGCTCCGGTGTGGGTTTCGGCGCGCAACGCTGGGTCGCCACCCTTCAACGGCAATGCGAATGTCTTGCCATCCTCATGTCATCTGCCGTACCAATCCGAGATCATACCGCCATAACCGCAGGCGGTCGTCGAAGCATGCTGAAGCTAGCGCAACGAATGACAGCCAACTTCTGTGCTGGGGTGTGTGCCTCAACCGTACACAAATGGAACAAACTCAACGCCGGGAGCGTGGACGAGGACGTCCGTGTCATGACGCGGAAGAGCGTGGACGATCCCGGTGAACCACCGGGCATCGTGTTGAGTGCAGCTACGTCGGTGTGGCTGCCGGTATCGCCCCAACGACTGTTCGATTTCCTGCGGGACGAGCGGCTGAGGAGCGAATGGGACATCCTATCGAACGGAGGGCCCATGCAGGAGATGGCCCATATCGCGAAAGGGCAGGATCATGGAAACTGCGTCTCTCTATTAAGAGCCAGCGCTATGAATGCCAACCAGAGCAGTATGTTGATTCTACAAGAGACGTGCATAGACGCGGCGGGATCGCTTGTGGTGTACGCTCCGGTGGATATTCCGGCGATGCACGTCGTGATGAACGGCGGCGATTCGGCTTATGTGGCGCTTCTGCCGTCCGGGTTTGCTATAGTGCCTGACGGGGCGGTGACGCGGGGGCTGACAACGACGAATGGGAGTAGTCCAAGTGGCGGTGAGGGCCCACAGAGTCAGAGAGTGACAGGCGGTGGGTCCCTTCTCACCGTCGCATTTCAAATCCTCGTGAATAGCCTCCCTACGGCCAAGCTCACCGTAGAATCGGTTGAAACGGTCAACAATCTCATCTCTTGCACTGTCCAGAAGATCAAGGCCGCTCTTCAATGTGAAACATGA 2523 54.62 MSFGGFLDGGGGGGGGGGGARIVADLPYANSNSATANNNPTGGIGGGNMPTGAIAPPRLITQSLTKSMFNSPGLSLALTNMDGGQGDLAARLPEGFEHNVGRRGREDEHESRSGSDNMDGGSGDDQDAADNPPRKKRYHRHTPQQIQELEAVFKECPHPDEKQRLELSRRLCLETRQVKFWFQNRRTQMKTQLERHENTLLRQENDKLRAENMSIRDAMRNPICSNCGGPAIIGEISLEEQQLRIENARLKDELDRVCALAGKFLGRPISSLANSIAPPLPSSSLELGVGSNGFGSLTMATSMPIGPDFGGGLSGNLAVVPPPARSTPGMGLDRSVERSMLLELALAAMDELVKMAQTDEPLWIGSLEGGREILNQEEYMRTFTPCIGMKPNGFVTEASRETGMVIINSLALVETLMDSNRWAEMFPCMIARTTTTDVISGGMGGTRNGALQLMHAELQVLSPLVPVREVNFLRFCKQHAEGVWAVVDVSVDAMRETPTGASSFINCRRLPSGCVVQDMPNGYSKVTWVEHAEYDDSQVHQLYRPLLSSGVGFGAQRWVATLQRQCECLAILMSSAVPIRDHTAITAGGRRSMLKLAQRMTANFCAGVCASTVHKWNKLNAGSVDEDVRVMTRKSVDDPGEPPGIVLSAATSVWLPVSPQRLFDFLRDERLRSEWDILSNGGPMQEMAHIAKGQDHGNCVSLLRASAMNANQSSMLILQETCIDAAGSLVVYAPVDIPAMHVVMNGGDSAYVALLPSGFAIVPDGAVTRGLTTTNGSSPSGGEGPQSQRVTGGGSLLTVAFQILVNSLPTAKLTVESVETVNNLISCTVQKIKAALQCET 840
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34276663 34281499 - Lag0016171.1 Lac12g1799 590396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1799 840 Coils Coil 186 218 - -
Lac12g1799 840 SUPERFAMILY Bet v1-like 596 833 - -
Lac12g1799 840 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 113 839 IPR042160 -
Lac12g1799 840 SUPERFAMILY Bet v1-like 336 568 - -
Lac12g1799 840 ProSiteProfiles START domain profile. 334 571 IPR002913 GO:0008289(InterPro)
Lac12g1799 840 Pfam Homeodomain 135 190 IPR001356 GO:0003677(InterPro)
Lac12g1799 840 ProSiteProfiles 'Homeobox' domain profile. 132 192 IPR001356 GO:0003677(InterPro)
Lac12g1799 840 Coils Coil 233 253 - -
Lac12g1799 840 MobiDBLite consensus disorder prediction 95 142 - -
Lac12g1799 840 FunFam Homeobox-leucine zipper protein HDG1 122 208 - -
Lac12g1799 840 SMART START_1 343 568 IPR002913 GO:0008289(InterPro)
Lac12g1799 840 SMART HOX_1 133 196 IPR001356 GO:0003677(InterPro)
Lac12g1799 840 Pfam START domain 343 568 IPR002913 GO:0008289(InterPro)
Lac12g1799 840 CDD START_ArGLABRA2_like 338 567 - -
Lac12g1799 840 FunFam Homeobox-leucine zipper protein GLABRA 2 343 567 - -
Lac12g1799 840 Gene3D - 411 560 IPR023393 -
Lac12g1799 840 SUPERFAMILY Homeodomain-like 117 192 IPR009057 -
Lac12g1799 840 Gene3D - 122 208 - -
Lac12g1799 840 MobiDBLite consensus disorder prediction 770 790 - -
Lac12g1799 840 CDD homeodomain 134 192 IPR001356 GO:0003677(InterPro)
Lac12g1799 840 ProSitePatterns 'Homeobox' domain signature. 167 190 IPR017970 GO:0000981(InterPro)|GO:0006355(InterPro)
Lac12g1799 840 MobiDBLite consensus disorder prediction 96 115 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g0297 Lac-Chr11:2949290 Lac12g1799 Lac-Chr12:34276663 3.20E-163 dispersed
Lac11g0744 Lac-Chr11:7786545 Lac12g1799 Lac-Chr12:34276663 2.70E-151 dispersed
Lac11g2444 Lac-Chr11:40603603 Lac12g1799 Lac-Chr12:34276663 1.90E-174 dispersed
Lac12g0611 Lac-Chr12:6484005 Lac12g1799 Lac-Chr12:34276663 9.60E-221 dispersed
Lac12g1799 Lac-Chr12:34276663 Lac5g2912 Lac-Chr5:47267150 5.70E-267 dispersed
Lac12g1799 Lac-Chr12:34276663 Lac7g0267 Lac-Chr7:2084203 3.80E-279 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23074 PF01852 START 2.10E-58 CL0209 Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1799 K09338 - csv:101222248 1535.39