Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g1849 | ATGGCTGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGGCCACCCATCTCCGTATCAACGACAACGAACCCTCCGACTCCTCTCGAATGGACCTTCTTGCCCTTGCTCCCAAGCAGGAGCTTCCCGATTCCGACGACTCCAAGCTCCCGCCGCCGGAAATTCAGCTCGTCAAGTTCACGGCCGAGATTGCTAAAACGGTCTCGTCTCTCCCGCCCAAGAGAGCCTCCACCAAGGATCGTCACACTAAAGTCGAGGGCCGCGGCCGCCGAATCCGGATTCCGGCCACCTGTGCGGCTCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGCTGGCTACTCGAACGGGCCGAGCCGGCTATCATCGCCGCTACTGGGACTGGTACCATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACTACCACTTCTTCTAACCACGATTCCGCCGACCAATCCGGCGCCAAGAAGCGCCGTAAACGCCCCGCTAACAGTGATTACGTTGACGTAAATGACGCCGTTTCCGTCTCCGCCTCAAACGGCGTCGTGCAGGTTGGTGCTGCTGCCGGTTCCGCCGCCGTTCAACAGGCTTTTCCACCGGGGTTTGTTCCGGTGTGGGCCATTCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGCTTGCTCTTCCACCCGTCCGCAGTTGTTCTCATTTCCGGCACCGGCGGCGGCGCCACTGATCAACACGACGGCGAGGCCGATTTCCGCCGTGCCGTCGAAGCCGGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCGAGCACTTCGAGCTCTTCGGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGCCCCGACAACCAGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGGTCATCCTCAAAACATTGA | 1032 | 58.04 | MADIQKQELDDDDDSPATHLRINDNEPSDSSRMDLLALAPKQELPDSDDSKLPPPEIQLVKFTAEIAKTVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSNHDSADQSGAKKRRKRPANSDYVDVNDAVSVSASNGVVQVGAAAGSAAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAAPLINTTARPISAVPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTAPTTSKTTTQMLRDFSLEIYDKEELQFMSRSSSKH | 343 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 34902572 | 34903603 | + | Lag0016221.1 | Lac12g1849 | 590446 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g1849 | 343 | Pfam | TCP family transcription factor | 79 | 175 | IPR017887 | - | |
| Lac12g1849 | 343 | MobiDBLite | consensus disorder prediction | 154 | 180 | - | - | |
| Lac12g1849 | 343 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
| Lac12g1849 | 343 | MobiDBLite | consensus disorder prediction | 1 | 28 | - | - | |
| Lac12g1849 | 343 | ProSiteProfiles | TCP domain profile. | 80 | 134 | IPR017887 | - | |
| Lac12g1849 | 343 | PANTHER | TRANSCRIPTION FACTOR TCP4-RELATED | 69 | 295 | IPR005333 | GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER) | |
| Lac12g1849 | 343 | MobiDBLite | consensus disorder prediction | 165 | 180 | - | - | |
| Lac12g1849 | 343 | MobiDBLite | consensus disorder prediction | 265 | 316 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g1849 | Lac-Chr12:34902572 | Lac5g2885 | Lac-Chr5:47098031 | 8.80E-49 | dispersed | |
| Lac12g1849 | Lac-Chr12:34902572 | Lac5g1703 | Lac-Chr5:34346919 | 7.30E-11 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 23077 | PF03634 | TCP | 4.70E-30 | No_clan | Lac | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g1849 | - | - | - | 0.0 |