Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1849 ATGGCTGATATTCAGAAACAAGAACTCGACGACGACGACGACTCTCCGGCCACCCATCTCCGTATCAACGACAACGAACCCTCCGACTCCTCTCGAATGGACCTTCTTGCCCTTGCTCCCAAGCAGGAGCTTCCCGATTCCGACGACTCCAAGCTCCCGCCGCCGGAAATTCAGCTCGTCAAGTTCACGGCCGAGATTGCTAAAACGGTCTCGTCTCTCCCGCCCAAGAGAGCCTCCACCAAGGATCGTCACACTAAAGTCGAGGGCCGCGGCCGCCGAATCCGGATTCCGGCCACCTGTGCGGCTCGTATCTTCCAGTTGACTCGAGAGCTCGGCCACAAGTCCGACGGCGAAACCATCCGCTGGCTACTCGAACGGGCCGAGCCGGCTATCATCGCCGCTACTGGGACTGGTACCATTCCCGCCATCGCCATGTCTGTTAATGGCACTCTCAAAATCCCCACTACCACTTCTTCTAACCACGATTCCGCCGACCAATCCGGCGCCAAGAAGCGCCGTAAACGCCCCGCTAACAGTGATTACGTTGACGTAAATGACGCCGTTTCCGTCTCCGCCTCAAACGGCGTCGTGCAGGTTGGTGCTGCTGCCGGTTCCGCCGCCGTTCAACAGGCTTTTCCACCGGGGTTTGTTCCGGTGTGGGCCATTCCATCGAACGCCATAATTCCCGGGGCGGTTTTCATGGTTCCATCCGTGGCTTGCTCTTCCACCCGTCCGCAGTTGTTCTCATTTCCGGCACCGGCGGCGGCGCCACTGATCAACACGACGGCGAGGCCGATTTCCGCCGTGCCGTCGAAGCCGGACACGTCTCACATTCAATCCAGCCCCACCAATCAAAGCTCGAGCACTTCGAGCTCTTCGGCTTCCAAGTCTCAATCCGTCATGGCGCCGATCTCGAGCTCCACCGCCCCGACAACCAGCAAAACGACGACGCAGATGCTTAGAGACTTCTCGTTGGAGATATACGATAAGGAAGAGCTTCAATTCATGTCTCGGTCATCCTCAAAACATTGA 1032 58.04 MADIQKQELDDDDDSPATHLRINDNEPSDSSRMDLLALAPKQELPDSDDSKLPPPEIQLVKFTAEIAKTVSSLPPKRASTKDRHTKVEGRGRRIRIPATCAARIFQLTRELGHKSDGETIRWLLERAEPAIIAATGTGTIPAIAMSVNGTLKIPTTTSSNHDSADQSGAKKRRKRPANSDYVDVNDAVSVSASNGVVQVGAAAGSAAVQQAFPPGFVPVWAIPSNAIIPGAVFMVPSVACSSTRPQLFSFPAPAAAPLINTTARPISAVPSKPDTSHIQSSPTNQSSSTSSSSASKSQSVMAPISSSTAPTTSKTTTQMLRDFSLEIYDKEELQFMSRSSSKH 343
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34902572 34903603 + Lag0016221.1 Lac12g1849 590446

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1849 343 Pfam TCP family transcription factor 79 175 IPR017887 -
Lac12g1849 343 MobiDBLite consensus disorder prediction 154 180 - -
Lac12g1849 343 MobiDBLite consensus disorder prediction 1 32 - -
Lac12g1849 343 MobiDBLite consensus disorder prediction 1 28 - -
Lac12g1849 343 ProSiteProfiles TCP domain profile. 80 134 IPR017887 -
Lac12g1849 343 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 69 295 IPR005333 GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0043565(PANTHER)
Lac12g1849 343 MobiDBLite consensus disorder prediction 165 180 - -
Lac12g1849 343 MobiDBLite consensus disorder prediction 265 316 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1849 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1849 Lac-Chr12:34902572 Lac5g2885 Lac-Chr5:47098031 8.80E-49 dispersed
Lac12g1849 Lac-Chr12:34902572 Lac5g1703 Lac-Chr5:34346919 7.30E-11 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac8g2023 . 40 264 TCP Transcription Factor Family AT5G23280 62.5 3.8e-65 245.7
Lac13g0918 . 36 260 TCP Transcription Factor Family AT5G23280 58.5 6.9e-59 224.9
Lac10g2715 . 40 210 TCP Transcription Factor Family AT5G23280 65.5 3.1e-51 199.5
Lac8g2693 . 40 210 TCP Transcription Factor Family AT5G23280 66.1 9.0e-51 198.0
Lac12g1849 . 53 342 TCP Transcription Factor Family AT2G45680 54.1 3.2e-70 263.1
Lac13g0309 . 67 167 TCP Transcription Factor Family AT3G47620 88.3 2.3e-42 171.0
Lac13g0026 . 155 237 TCP Transcription Factor Family AT3G47620 90.4 1.9e-36 151.4
Lac10g0060 . 59 160 TCP Transcription Factor Family AT3G47620 72.5 4.2e-36 150.2
Lac8g0084 . 1 313 TCP Transcription Factor Family AT3G27010 56.9 5.4e-61 232.3
Lac4g2142 . 26 251 TCP Transcription Factor Family AT3G27010 53.7 9.9e-55 211.5
Lac8g2023 . 1 263 TCP Transcription Factor Family AT5G08330 58.4 3.8e-67 252.3
Lac13g0918 . 8 258 TCP Transcription Factor Family AT5G08330 54.8 3.5e-60 229.2
Lac10g2715 . 1 214 TCP Transcription Factor Family AT5G08330 56.4 1.2e-52 204.1
Lac8g2693 . 1 214 TCP Transcription Factor Family AT5G08330 58.9 4.6e-52 202.2
Lac4g0252 . 33 149 TCP Transcription Factor Family AT3G02150 66.1 2.8e-37 153.7
Lac12g0797 . 6 168 TCP Transcription Factor Family AT2G31070 53.6 5.1e-39 159.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011535 0 0 0 0 0 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 31
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23077 PF03634 TCP 4.70E-30 No_clan Lac TF