Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1850 ATGGATAATTACGGTTCTTCCCCTTCATATCCATACCATAATCCATATGCATATCCTCGTGCAGTTCCTCCTCAATACCCACCTCATTCTCAATATCCGCCTCCTCAATACCCACCTCTTCCTTATGCAGATCCATATGCTCGTCCTCCTTACCCTTACGCGTATAATCCTCCACATGCCTCTGCATTTCCATATCCCCCACCCCCATCTCATTCTGGCCTAGAGTATCATCAACATCCACCTCCACATTCTGGTCTTGTACCTTATTCATCATATCCTTACTCTGATACCTCGTCTACTAGTAGTGCTGCTAGGCCATCCATTCAGTATCATAACAATTTCCAATCTGGTACATCCCAATATCGGTATCAAGAATCCAATACATACCCTCCACCAGAAAGTCAATATCCACCACCCCCTTCACGAGTAAATAGCTTCTCCAGCCACTACAGGAATGATAGTGCTGATTCCACCTCTTCCGTCTCTTCTGCATACCCACCTCTGGATGACCTTATGTGCAATGTACATTTGTCTGATCATCAACCAACTGCTCCAGCTTCGCCTCCTGCACCTGCTGCAGCACCTGTACCTACACCTTCACCTGCACCTGCACCTGCACAACCTTCAGCTTTGTTATTGGCATCACCTCAAAGTGCAAGATATGATCGGCGTGATCGGTTTTATGGCTTTCCGAATTCATCCTTTTCTAGTTTCGACACAGGGGGTTCAGATCAAATGACTACATCCAAACAACCTTCATTTTCCCATTCAAGCTCATTCAGTGGTTCTCAACATGGTCAGAACTTGCAGATTGTTCCATTGAACAATAAAGCATCATTGAAAGTTTTGCTTTTACATGGAAACTTAGAAATATGGGTTAATGAGGCCAGAAATCTTCCAAATATGGATATGTTTCACAAAACATTGGGGGATATGTTCGCAAAATTACCTGGGCACATGAGCAACAAAATTGAAGGACGCGTGAGTCATAAGATCACCAGCGATCCTTACGTATCGATCTCTGTAGCAAATGCAGTTATTGGGAGGACTTTTGTGATAAGCAATAATGAAAATCCTATATGGAGGCAACATTTCTATGTCCCCGTTGCACATTATGCTGCTGAAGTAGTTTTTGTGGTTAAAGACAGTGATGTTGTTGGTTCACAGCTAATTGGAACTGTAACAATTTCTGCAGAACAAATATATTCAGGGTCTATAGTTGAGGGAACCTTCCCAGTCCTACTTGGTGGGAAGCCATGCAAGCATGGAGCTGCTCTAAATCTTTCTATTCAATATACCCCAATGGAGAGGCTTAGTACTTATCATCATGGAGTGGGAGCTGGCCCTGATTATCAGGGGGTTCCTGATACATATTTCCCCCTCAGAAAGGGCGGAGCTGTCACTCTTTATCAAGATGCCCATGTTCCAGACGGACATCTTCCAAATTTGATGCTTGATAATGGTACGTACTATGTACATGGGAAGTGTTGGCATGACATCTTTGATGCCGTACGTCAGGCTCGCAGGTTAATTTACATAACTGGGTGGTCAGTGTGGCACAAAGTGAAACTAGTTCGAGATACTGGCTATGCAACAGAGTGTACCCTTGGAGATCTCCTGAGGTCCAAGTCCCAGGAGGGAGTGAGAGTTTTGCTTCTTGTTTGGGACGATCCCACTTCTAGAAGCATTTTGGGTTATAAAACTGATGGTTTCATGCAAACCCATGATGAGGAAACTCGCCGTTTTTTCAAACACTCCTCTGTGCAAGTGATACTTTGTCCTCGTATTGCTGGAAAACGACATAGCTGGGTTAAGCAAAAAGAAGTTGGAACTATTTATACACACCATCAGAAAACAGTTATCGTGGATGCTGAAGCTGGAAATAATAGAAGAAAAATCATAGCTTTTGTTGGAGGGCTCGATTTATGTGACGGGCGGTATGATACTCCATCACATCCCATATTTCGGACACTTCAAACAACACACAAGGATGATTACCACAATCCTACATACACGGGTAGTGCTGTTGGTTGTCCAAGAGAACCATGGCATGATCTGCATAGCAAAATTGATGGTCCAGCAGCATATGATGTTTTGACTAATTTTGAGGAGCGATGGAGGAGGGCTTCAAAACCTCACGGGATAAAGAAGTTGAAATCATATGATGATGCTTTGCTGAGCATTGAAAGAATTCATGACATAGTCGGAATTTCTGACGCTTACTGCACTAATGAAAATGACCCCGAATCATGGCATGTGCAGATTTTTCGCTCAATTGATTCAAGTTCTGTTAAAGATTTCCCAAAGGATCCAAAAGATGCCCCAAGCAAGAACCTTATATGTGGAAAGAATGTGCTGATTGACATGAGTATACACACAGCATATGTGAAAGCCATTCGAGCTGCCCAACATTACATTTATATAGAGAACCAATATTTCATTGGATCATCCTTCAATTGGAATACAAACAAAGATATAGGTGCCAACAATTTGATTCCAATGGAAATTGCGCTAAAGATTGCTGATAAAATCAGAGCAAATGAGAGATTTGCTGCATATATTGTTATCCCCATGTGGCCCGAGGGCGTTCCAACTGCTGCTGCCACTCAGAGGATACTATTTTGGCAGCAAAAAACCATGCAAATGATGTATGAGGTCATTTACAAGGCTTTGATGGAGGTTGGTCTTGAGGAAGCATTCTCTCCTCAAGACTATTTGAACTTCTTCTGCCTGGGAAATCGTGAGGCTATGGATGGACATGATCCTTCGTATTCTGAAAGTCCTAATGCAGAAAACACCCCTCAGGCTCTTAGTCGGAAAAGCAGAAGGTTTATGATATATGTTCACTCCAAAGGCATGATAGTTGATGACGAGTATGTAATTTTGGGATCTGCTAACATCAACCAGAGATCCATGGAAGGAACAAGAGACACTGAGATTGCTATGGGAGCCTATCAACCTCATTATACGTGGGCAAGGAAACTTGCACATCCTCGTGGACAGATCTATGGATACAGGATGTCGTTGTGGGCGGAGCACACGGGAACTATCGAAGACTGTTTCAACCAACCCGAGAGCCTGGAATGCGTCAAAAGAGTTAGAACAATGGGAGAATTAAACTGGAAACAGTTTGCTGCAGATGATGTAACAGAGATGAGAGGACACCTTCTGAAGTACCCAGTTGAAGTTGATAGAAGAGGTAGAGTAAGATCTCTTCCTGGACATGAAAACTTTCCAGATGTAGGAGGAAAAATAGTTGGTTCTTTTCTTGGCATTCAGGAGAATCTCACTATCTAA 3297 42.92 MDNYGSSPSYPYHNPYAYPRAVPPQYPPHSQYPPPQYPPLPYADPYARPPYPYAYNPPHASAFPYPPPPSHSGLEYHQHPPPHSGLVPYSSYPYSDTSSTSSAARPSIQYHNNFQSGTSQYRYQESNTYPPPESQYPPPPSRVNSFSSHYRNDSADSTSSVSSAYPPLDDLMCNVHLSDHQPTAPASPPAPAAAPVPTPSPAPAPAQPSALLLASPQSARYDRRDRFYGFPNSSFSSFDTGGSDQMTTSKQPSFSHSSSFSGSQHGQNLQIVPLNNKASLKVLLLHGNLEIWVNEARNLPNMDMFHKTLGDMFAKLPGHMSNKIEGRVSHKITSDPYVSISVANAVIGRTFVISNNENPIWRQHFYVPVAHYAAEVVFVVKDSDVVGSQLIGTVTISAEQIYSGSIVEGTFPVLLGGKPCKHGAALNLSIQYTPMERLSTYHHGVGAGPDYQGVPDTYFPLRKGGAVTLYQDAHVPDGHLPNLMLDNGTYYVHGKCWHDIFDAVRQARRLIYITGWSVWHKVKLVRDTGYATECTLGDLLRSKSQEGVRVLLLVWDDPTSRSILGYKTDGFMQTHDEETRRFFKHSSVQVILCPRIAGKRHSWVKQKEVGTIYTHHQKTVIVDAEAGNNRRKIIAFVGGLDLCDGRYDTPSHPIFRTLQTTHKDDYHNPTYTGSAVGCPREPWHDLHSKIDGPAAYDVLTNFEERWRRASKPHGIKKLKSYDDALLSIERIHDIVGISDAYCTNENDPESWHVQIFRSIDSSSVKDFPKDPKDAPSKNLICGKNVLIDMSIHTAYVKAIRAAQHYIYIENQYFIGSSFNWNTNKDIGANNLIPMEIALKIADKIRANERFAAYIVIPMWPEGVPTAAATQRILFWQQKTMQMMYEVIYKALMEVGLEEAFSPQDYLNFFCLGNREAMDGHDPSYSESPNAENTPQALSRKSRRFMIYVHSKGMIVDDEYVILGSANINQRSMEGTRDTEIAMGAYQPHYTWARKLAHPRGQIYGYRMSLWAEHTGTIEDCFNQPESLECVKRVRTMGELNWKQFAADDVTEMRGHLLKYPVEVDRRGRVRSLPGHENFPDVGGKIVGSFLGIQENLTI 1098
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 34910714 34922969 - Lag0016222.1 Lac12g1850 590447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1850 1098 CDD C2_plant_PLD 281 433 - -
Lac12g1850 1098 PANTHER PHOSPHOLIPASE D 284 1086 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Lac12g1850 1098 SMART pld_4 611 646 IPR001736 GO:0003824(InterPro)
Lac12g1850 1098 SMART pld_4 944 971 IPR001736 GO:0003824(InterPro)
Lac12g1850 1098 Pfam Phospholipase D Active site motif 946 971 IPR001736 GO:0003824(InterPro)
Lac12g1850 1098 Pfam Phospholipase D Active site motif 613 646 IPR001736 GO:0003824(InterPro)
Lac12g1850 1098 Gene3D Endonuclease Chain A 488 725 - -
Lac12g1850 1098 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 611 646 IPR001736 GO:0003824(InterPro)
Lac12g1850 1098 Gene3D Endonuclease Chain A 760 994 - -
Lac12g1850 1098 SUPERFAMILY Phospholipase D/nuclease 743 1030 - -
Lac12g1850 1098 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 944 971 IPR001736 GO:0003824(InterPro)
Lac12g1850 1098 MobiDBLite consensus disorder prediction 140 165 - -
Lac12g1850 1098 MobiDBLite consensus disorder prediction 90 107 - -
Lac12g1850 1098 MobiDBLite consensus disorder prediction 184 206 - -
Lac12g1850 1098 Gene3D C2 domain 282 424 IPR035892 -
Lac12g1850 1098 Pfam C2 domain 287 412 IPR000008 -
Lac12g1850 1098 MobiDBLite consensus disorder prediction 62 107 - -
Lac12g1850 1098 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 285 435 IPR035892 -
Lac12g1850 1098 MobiDBLite consensus disorder prediction 122 208 - -
Lac12g1850 1098 FunFam Phospholipase D delta 487 724 - -
Lac12g1850 1098 MobiDBLite consensus disorder prediction 238 262 - -
Lac12g1850 1098 MobiDBLite consensus disorder prediction 22 43 - -
Lac12g1850 1098 SUPERFAMILY Phospholipase D/nuclease 452 711 - -
Lac12g1850 1098 FunFam Phospholipase D 758 990 - -
Lac12g1850 1098 ProSiteProfiles C2 domain profile. 265 411 IPR000008 -
Lac12g1850 1098 SMART C2_3c 288 410 IPR000008 -
Lac12g1850 1098 Pfam Phospholipase D C terminal 1018 1088 IPR024632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1850 Lac-Chr12:34910714 Lac5g0583 Lac-Chr5:6529221 0.00E+00 dispersed
Lac12g1850 Lac-Chr12:34910714 Lac11g0678 Lac-Chr11:7033408 7.90E-200 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1850 K01115 - csv:101218942 1885.92