Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1856 ATGGGAAGAGGAAGAGTTGAACTGAAGCGAATAGAGAACAAAATCAACCGTCAAGTCACATTCTCCAAGCGCCGAAATGGCCTCCTCAAAAAGGCCTATGAACTCTCTGTTCTTTGCGATGCCGAGGTCGCTCTCATCATCTTCTCCAGCCGCGGCAAGCTCTACGAGTTTGGCAGTGCAGGTACCACCAAAACATTGGAGCGTTACCAACGTTGTTGCTTCTCTCCTCAACACAATTACATCGAACAAGAAACCCAGAACTGGTTCCAGGAAATCTCAAAACTGAAAGCTAAATATGAATCTCTTTGTCGGACTCATAGGCATTTGCTTGGGGAAGATCTTGGACCATTGAGTGTAAAGGAGCTCCAAAATCTTGAAAAGCAACTTGAAGCAGCCCTTGCTCAAGCTAGACAAAGGAAGACTCAGATTATGATGGAGCAGATGGAAGACCTGCGCAGAAAGGAACGTCAACTTGGGGACCTCAACAGAGAGCTTAAGCTCAAGCTTGAGACAGAGGGACAAAATCTTAAAGCCATCCAAAGTTTTTGGAGCTCTAGCTCTGCACCTGCTGAACATGGCAACAGCTTCCCAATGCAAGCTAGCCCTATCGAATGCCAACACGAACCCATCTTACAAATCGGGTATCAGAATTATTTCTCAGCAGAGGGGCCATCATCTGTCCAAAAGAGCATGACATATCGAATTTTGCCCGAAAATCATGCAAATCTGGCCAAAATAATGAATCCCGGCCAGGATTCATGCATTCCAGGCCAAAATTCGGTCGGGAATGTATGA 795 46.04 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFGSAGTTKTLERYQRCCFSPQHNYIEQETQNWFQEISKLKAKYESLCRTHRHLLGEDLGPLSVKELQNLEKQLEAALAQARQRKTQIMMEQMEDLRRKERQLGDLNRELKLKLETEGQNLKAIQSFWSSSSAPAEHGNSFPMQASPIECQHEPILQIGYQNYFSAEGPSSVQKSMTYRILPENHANLAKIMNPGQDSCIPGQNSVGNV 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35022565 35028563 + Lag0016228.1 Lac12g1856 590453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1856 264 Gene3D - 13 85 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 SUPERFAMILY SRF-like 2 92 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac12g1856 264 Coils Coil 119 171 - -
Lac12g1856 264 CDD MADS_MEF2_like 2 72 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Lac12g1856 264 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Lac12g1856 264 FunFam MADS-box transcription factor 1 13 85 - -
Lac12g1856 264 Pfam K-box region 83 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Lac12g1856 264 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 SMART madsneu2 1 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Lac12g1856 264 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0998 Lac-Chr10:8014426 Lac12g1856 Lac-Chr12:35022565 1.50E-39 dispersed
Lac12g1856 Lac-Chr12:35022565 Lac4g1844 Lac-Chr4:37649297 9.10E-54 dispersed
Lac12g1856 Lac-Chr12:35022565 Lac12g1859 Lac-Chr12:35070934 4.70E-18 proximal
Lac10g0592 Lac-Chr10:4542179 Lac12g1856 Lac-Chr12:35022565 1.20E-36 transposed
Lac2g3066 Lac-Chr2:48615683 Lac12g1856 Lac-Chr12:35022565 4.70E-29 transposed
Lac12g1856 Lac-Chr12:35022565 Lac7g0288 Lac-Chr7:2240055 5.20E-33 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23078 PF01486 K-box 8.70E-29 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1856 K09264 - csv:101219421 380.563