Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1878 ATGGCCCGACCCATATGGTCGGCCTCGCTTTGCCGAGCATATGGTCGGCCTCGGCAAAAGGCCGAGGCCGACCATTCGGCCCGTTTGCACGGGCCGAGCTCGATCACCTCTCTTCGGTCCCTAATGCCCCGAATCGCCCCGGTTTCGCCTGGTTCGCCCCGAAACGCCACCGAACTCCTAAAAACCCTAGGAGGACAAACAGCTCCTCCTCAGTTTTCTGACTTAGGCATCGGAGGCGGTGTGGCCTACACCACGCCGGTGTGCAGCGGTTTTTGCTGGTCTTGCAGGTCACGTCTTCCCCAGTTCCTACAAATTCACTGTTGGTGTCACGTGAAGGTCGGGCGTTGTTTGGAGAGATCCAACGCATTGGATTTGCAGCCAATAGAAATTTTTGAATTCCCACATGGATGGAATTACACCCCACAATCGCTCTCTTCCCCTCCTTTTCTCTCCAAAGATCTCCATCTCCACCATGGATTGTTCCACCACCAAAGCTCCGACGACGACCAGAGCGGCGGCGCCACCGGCGGATCTAAGAGGGACCGGGAGGAGGAAAACCCCACCACGGCGGCCGACAGCAAAGAATTGTCCAATTCTTCTTCTCGGCGGCCACGTGGCCGACCAGCTGGTTCCAAAAACAGGCCCAAGCCACCCATTATCATCACTAGAGACAGCGCCAACGCCCTCAGATCCCATCTCATCGAAATCTCCACCGCCTCCGACATCGTCGACTCCCTCGCCGCCTTCGCGCGCCGCCGCCAGCGCGGCGTTTGTATTTTAAGCGCCACCGGAACTGTCGCCAACGTCACTCTCCGTCAGCCGGCCTCCGCCGGCGCTGTCATCACCTTGCCTGGAAGATTTGAAATTCTCTCCCTCTCCGGCTCCTTCCTCCCGCCGCCGGCTCCCCCGGCCGCCTCCGGCCTCACCGTCTACTTGGCCGGCGGGCAGGGGCAGGTCGTGGGCGGGAATGTCGTCGGCCCACTTTCGGCGTCCGGTCCGGTGATTATTATGGCGGCTTCGTTTGGTAATGCGGCGTATGAGCGGCTCCCCATTGATGACGACGACGAAACCTCCCCGGCGGCGGAGATGGCTGGACAGCAGGCGGCGGCACCACCGCCGCCGCAATTGTTGGGGGATCCTAATGGGGGTTTGTTTCATGGGAATGTTGTGAATTCTTCATGCCAATTGCCAGCGGAGGCGGCAGCGGCGGCGGCGTATTGGGGAGGAGGACGGCCACCGTATTGA 1245 60.48 MARPIWSASLCRAYGRPRQKAEADHSARLHGPSSITSLRSLMPRIAPVSPGSPRNATELLKTLGGQTAPPQFSDLGIGGGVAYTTPVCSGFCWSCRSRLPQFLQIHCWCHVKVGRCLERSNALDLQPIEIFEFPHGWNYTPQSLSSPPFLSKDLHLHHGLFHHQSSDDDQSGGATGGSKRDREEENPTTAADSKELSNSSSRRPRGRPAGSKNRPKPPIIITRDSANALRSHLIEISTASDIVDSLAAFARRRQRGVCILSATGTVANVTLRQPASAGAVITLPGRFEILSLSGSFLPPPAPPAASGLTVYLAGGQGQVVGGNVVGPLSASGPVIIMAASFGNAAYERLPIDDDDETSPAAEMAGQQAAAPPPPQLLGDPNGGLFHGNVVNSSCQLPAEAAAAAAYWGGGRPPY 414
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35278159 35282236 - Lag0016250.1 Lac12g1878 590475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1878 414 Pfam Plants and Prokaryotes Conserved (PCC) domain 230 341 IPR005175 -
Lac12g1878 414 Gene3D - 229 359 - -
Lac12g1878 414 ProSiteProfiles PPC domain profile profile. 226 366 IPR005175 -
Lac12g1878 414 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 171 372 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Lac12g1878 414 MobiDBLite consensus disorder prediction 174 190 - -
Lac12g1878 414 SUPERFAMILY AF0104/ALDC/Ptd012-like 226 353 - -
Lac12g1878 414 MobiDBLite consensus disorder prediction 162 220 - -
Lac12g1878 414 FunFam AT-hook motif nuclear-localized protein 229 356 - -
Lac12g1878 414 CDD DUF296 230 297 IPR005175 -
Lac12g1878 414 MobiDBLite consensus disorder prediction 350 382 - -
Lac12g1878 414 MobiDBLite consensus disorder prediction 191 206 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g3227 Lac-Chr10:46369609 Lac12g1878 Lac-Chr12:35278159 1.40E-49 dispersed
Lac12g1878 Lac-Chr12:35278159 Lac7g0365 Lac-Chr7:2817085 3.20E-61 dispersed
Lac12g1878 Lac-Chr12:35278159 Lac13g1575 Lac-Chr13:16689371 1.50E-24 wgd
Lac12g1878 Lac-Chr12:35278159 Lac7g0316 Lac-Chr7:2435494 6.90E-64 wgd
Lac12g1878 Lac-Chr12:35278159 Lac8g1595 Lac-Chr8:33763960 7.20E-29 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1878 - - - 0.0