Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g1883 | ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGCCCGGCAGCTGCCAGTGCCGGCGGTGGCGGCGGAGGAGGCCCATGTGGGGCCTGCAAGTTCTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTCGCCCCTTATTTCGACTCCGAGCAAGGCGCTGCCCACTTCGCTGCAGTTCACAAGGTCTTCGGAGCTAGCAACGTCTCCAAACTCCTCCTTCATATTCCTGTCCACAAGCGTCTCGACGCTGTCGTCACCATTTGCTACGAGGCTCAGGCTCGCCTCCGTGACCCCGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTATCTTCAAGCCCATCTAGCTACACTGGAGCTGCCGTCGCCGCCGAACCCTCCGCCTCCGCCTCCGCCGCCATGTTTCCCGGCGCAACCGCCTCTCTCCATCTCAGACCTGCCGTCGGCCTCCTCCTTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCACCGCCAGTTTGCCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGTCGTCCGCGGCGGCCGGAGAGGGCGACCTTCAAGCCTTGGCCCGTGAACTCCTCCATAGACACGGCGCTCCGCCGTGCTCCGACACCTCGTCGCCGCCGTCGCTCTCTAAATGA | 729 | 63.37 | MSANPSTSGGGPAAASAGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPNPPPPPPPPCFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDHRQFAGGGGGGGGGGGSSAAAGEGDLQALARELLHRHGAPPCSDTSSPPSLSK | 242 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 35332115 | 35335634 | - | Lag0016255.1 | Lac12g1883 | 590480 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g1883 | 242 | ProSiteProfiles | LOB domain profile. | 24 | 126 | IPR004883 | - | |
Lac12g1883 | 242 | MobiDBLite | consensus disorder prediction | 190 | 242 | - | - | |
Lac12g1883 | 242 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Lac12g1883 | 242 | MobiDBLite | consensus disorder prediction | 131 | 151 | - | - | |
Lac12g1883 | 242 | Pfam | Lateral organ boundaries (LOB) domain | 25 | 123 | IPR004883 | - | |
Lac12g1883 | 242 | PANTHER | LOB DOMAIN CONTAINING PROTEIN | 22 | 141 | - | GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac11g2627 | Lac-Chr11:42259733 | Lac12g1883 | Lac-Chr12:35332115 | 1.50E-41 | dispersed | |
Lac12g1883 | Lac-Chr12:35332115 | Lac13g1006 | Lac-Chr13:8504206 | 2.70E-36 | dispersed | |
Lac12g1883 | Lac-Chr12:35332115 | Lac12g1886 | Lac-Chr12:35395275 | 1.10E-42 | proximal | |
Lac4g1874 | Lac-Chr4:38028577 | Lac12g1883 | Lac-Chr12:35332115 | 1.20E-39 | transposed | |
Lac7g2139 | Lac-Chr7:35070905 | Lac12g1883 | Lac-Chr12:35332115 | 5.20E-40 | transposed | |
Lac12g1883 | Lac-Chr12:35332115 | Lac7g0319 | Lac-Chr7:2464212 | 2.60E-55 | wgd | |
Lac12g1883 | Lac-Chr12:35332115 | Lac7g2531 | Lac-Chr7:43325113 | 2.10E-20 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23080 | PF03195 | LOB | 1.90E-38 | No_clan | Lac | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g1883 | K21994 | - | csv:101220603 | 369.392 |