Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1883 ATGAGTGCCAACCCTAGTACTAGCGGCGGCGGCCCGGCAGCTGCCAGTGCCGGCGGTGGCGGCGGAGGAGGCCCATGTGGGGCCTGCAAGTTCTTGAGAAGAAAGTGTGTTCCCGGTTGCATATTCGCCCCTTATTTCGACTCCGAGCAAGGCGCTGCCCACTTCGCTGCAGTTCACAAGGTCTTCGGAGCTAGCAACGTCTCCAAACTCCTCCTTCATATTCCTGTCCACAAGCGTCTCGACGCTGTCGTCACCATTTGCTACGAGGCTCAGGCTCGCCTCCGTGACCCCGTCTACGGTTGCGTCGCTCACATCTTCGCTCTTCAACAACAGGTGGTGAGTTTACAAGCCGAGCTGTCGTATCTTCAAGCCCATCTAGCTACACTGGAGCTGCCGTCGCCGCCGAACCCTCCGCCTCCGCCTCCGCCGCCATGTTTCCCGGCGCAACCGCCTCTCTCCATCTCAGACCTGCCGTCGGCCTCCTCCTTGCCGGCCACTTACGACTTGTCGTCCCTCTTCGACCCAATGGCTCAGCCTGCATGGGCCATGCAACAGCAGCGGCTCGACCACCGCCAGTTTGCCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGCGGGTCGTCCGCGGCGGCCGGAGAGGGCGACCTTCAAGCCTTGGCCCGTGAACTCCTCCATAGACACGGCGCTCCGCCGTGCTCCGACACCTCGTCGCCGCCGTCGCTCTCTAAATGA 729 63.37 MSANPSTSGGGPAAASAGGGGGGGPCGACKFLRRKCVPGCIFAPYFDSEQGAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVSLQAELSYLQAHLATLELPSPPNPPPPPPPPCFPAQPPLSISDLPSASSLPATYDLSSLFDPMAQPAWAMQQQRLDHRQFAGGGGGGGGGGGSSAAAGEGDLQALARELLHRHGAPPCSDTSSPPSLSK 242
       

Gff information


Chromosome Start End Strand Old_gene Gene Num
12 35332115 35335634 - Lag0016255.1 Lac12g1883 590480
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1883 242 ProSiteProfiles LOB domain profile. 24 126 IPR004883 -
Lac12g1883 242 MobiDBLite consensus disorder prediction 190 242 - -
Lac12g1883 242 MobiDBLite consensus disorder prediction 1 21 - -
Lac12g1883 242 MobiDBLite consensus disorder prediction 131 151 - -
Lac12g1883 242 Pfam Lateral organ boundaries (LOB) domain 25 123 IPR004883 -
Lac12g1883 242 PANTHER LOB DOMAIN CONTAINING PROTEIN 22 141 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information


Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g2627 Lac-Chr11:42259733 Lac12g1883 Lac-Chr12:35332115 1.50E-41 dispersed
Lac12g1883 Lac-Chr12:35332115 Lac13g1006 Lac-Chr13:8504206 2.70E-36 dispersed
Lac12g1883 Lac-Chr12:35332115 Lac12g1886 Lac-Chr12:35395275 1.10E-42 proximal
Lac4g1874 Lac-Chr4:38028577 Lac12g1883 Lac-Chr12:35332115 1.20E-39 transposed
Lac7g2139 Lac-Chr7:35070905 Lac12g1883 Lac-Chr12:35332115 5.20E-40 transposed
Lac12g1883 Lac-Chr12:35332115 Lac7g0319 Lac-Chr7:2464212 2.60E-55 wgd
Lac12g1883 Lac-Chr12:35332115 Lac7g2531 Lac-Chr7:43325113 2.10E-20 wgd
       

Transcription factors information


Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23080 PF03195 LOB 1.90E-38 No_clan Lac TF
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1883 K21994 - csv:101220603 369.392