Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1886 ATGAATGGCGGCGGTGGCGGCGGCGGTCACGGTGGAGGGCCTTGCGGAGCGTGTAAGTTTTTGAGGAGAAAGTGTGTGAAAGGCTGCATTTTTGCACCGTATTTCGACTCCGACCAAGGTGCCGCCCACTTCGCCGCCGTGCATAAGGTGTTTGGAGCTAGCAATGCCTCCAAGCTCCTCCTCCGCATACCACCTCCCAAGCGTCTCGACGCTTGCGTTACTCTTTGTTACGAGGCTCTCGCTAGGGTTCGAGACCCCGTCTACGGTTGCGTTGCCCATATCTTCTCTCTTCAGCAGCAGGTAGTGAACTTGCAGGCAGAGCTAGCATACATCCAGGCCAAACTCTCCACCTTGCAGAGGCTGTTACCGCCGCCGCTACACAACCCGTCCCCGACCGCTCGACACCCGACGCTCCCGGAACTGACACCGAGCTCCGACATGGGCTTGCTGTCCAACGTTCCAATGGTCCTTGACCCACTCCAAACACAGCTAGCTGGTAATGAAACGAATAGTAGCTTTCTGAACCCAATTGATCAGCAAGAGATGAATGAAGATGGTGATCTTCAATCTCTGGCTCGAGAGTTCGTTTCGAGGTATTTGCCCGGAGTAAGATTCCGGCCGCCGTGCTCTCAGATTTAA 639 55.4 MNGGGGGGGHGGGPCGACKFLRRKCVKGCIFAPYFDSDQGAAHFAAVHKVFGASNASKLLLRIPPPKRLDACVTLCYEALARVRDPVYGCVAHIFSLQQQVVNLQAELAYIQAKLSTLQRLLPPPLHNPSPTARHPTLPELTPSSDMGLLSNVPMVLDPLQTQLAGNETNSSFLNPIDQQEMNEDGDLQSLAREFVSRYLPGVRFRPPCSQI 212
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35395275 35397942 + Lag0016258.1 Lac12g1886 590483
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1886 212 Pfam Lateral organ boundaries (LOB) domain 14 112 IPR004883 -
Lac12g1886 212 ProSiteProfiles LOB domain profile. 13 115 IPR004883 -
Lac12g1886 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 11 137 - GO:0005634(PANTHER)|GO:0009755(PANTHER)|GO:0045893(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1886 Lac-Chr12:35395275 Lac7g0319 Lac-Chr7:2464212 4.60E-40 dispersed
Lac12g1883 Lac-Chr12:35332115 Lac12g1886 Lac-Chr12:35395275 1.10E-42 proximal
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23081 PF03195 LOB 2.60E-36 No_clan Lac TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1886 - - - 0.0