Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1907 ATGATCGACGGTGCCCGGCGACCGGCGACTGGCGGCTGGTTTATGGAAGAAGGAAGAGTTTCAAGAAGAAGAAGGGAAGGGTTTGAAGAAGTGCGCTTCGCAGCTAGCGTTTTTCACGAGAATATTAGAGATGCTGATTTTGCAAAAGGATTGGCGGCTACTGTCGGTTTGAGGCTTGCAGTGGAGACAACTACTCGACCTTTTGTGCTGGAGACAGATTCTATGCAATGGAGGACAGATGTGACCGAGTATGGATGGAAGAAGGCCCGTCATGTGTCTTGGGCTTGTTGGCTGAGGAAGGAGTGCATGAGTTTCTCGGGTGAGGAGGGGAAGATGATCATTCTAAGCAGCTCCAGTCGCCGCCCAATCATCGTGCCTAAACACAGGGAAGGTAGTCTTGAAGGCTTAGGACTGTCTTATGAGTTCTATAGATCTGTTGTCACCCCGATAGGTGTCCAGAATGCGAGGTTAGGGGCTGACTTGAGGTCGTTGCTCTTTCACGCATCGGTCCCAACATTCATCGCCACGCCCCGTTGCCCTCTCCCTTCAGTCGCAACCAGCATTCAGCTCTTCCTTCCTCAGATCTACACTCTCCATCATCCTCACTCTCAGGTGCCAATTTGCTGGTTTGCAATCCATTTTGTTTCGATCTCTGTCCGGTGCCCTTCGTGTAATCTCGGAGGTGTCTTTCCCGAGAGGAGTCAAATGGATGGACCAACTGGTCGTAGTGGCGGTGGCGTGGATATGAATTTACCGAACTATAAGCTTGGAAAAACACTTGGCATTGGTTCATTTGGGAAAGTGAAAATTGCGGAGCATGCTTTAACGGGCCATAAAGTTGCTATTAAGATCCTTAACCGCCGGAAGATAAAAAACTTGGACATGGAAGAGAAAGTGAGGAGAGAGATCAAAATATTGAGATTGTTCATGCATCCTCACATTATACGGCTCTATGAGGTTATAGAGACTCCTGGAGACATTTATGTTGTGATGGAGTATGTAAAATCTGGAGAGCTATTTGACTATATTGTAGAAAAGGGAAGGTTGCAGGAAGATGAAGCCCGTAATTTTTTCCAACAGATAATCTCTGGTGTGGAGTACTGCCACAGGAATATGGTGGTTCACAGAGATCTTAAGCCTGAGAATTTGCTTTTAGACTCCAAATGTAACGTGAAGATTGCTGATTTTGGTTTGAGCAATATAATGCGTGATGGTCACTTTCTGAAGACAAGTTGTGGGAGTCCCAATTATGCTGCCCCGGAGGTCATCTCTGGGAAATTATATGCTGGACCTGAAGTAGATGTGTGGAGTTGTGGTGTTATTCTGTATGCTCTTCTATGCGGCACTCTTCCTTTTGACGATGAAAACATTCCCAACCTGTTTAAGAAAATAAAGGGTGGAATCTATACTCTCCCAAGTCATTTATCATCTGGTGCTAGAGAACTTATTCCTAGTATGCTGGTTGTTGACCCAATGAAGCGCATCACAATACCTGAGATTCGACAACACCCATGGTTTCAGGCTCATCTTCCCCGCTATTTAGCTGTGCCTCCACCTGATACAATGCAACAAGCAAAAAAGATCGACGAAGACATTCTTCAGGAGGTTGTAAAGATGGGATTTGACAGGAATCAGCTGGTGGAGTCTCTCCGTAACCGAATTCAAAATGAGGCCACTGTTGCTTATTATTTGTTGCTGGACAACCGGTTCCGTGTTTCTAGTGGTTATCTTGGAGCTGAGTTTCAGGAGACTATGGAAACAGGATTCAATCGTATGCACCCTGGTGATCCTACTAGTCCTGCTGTAGGACACCGGCTTCCTGGATTTATGGATTATCAAGGAATGGGCTTAAGATCACAGTTTTCAGTTGAGAGAAAGTGGGCTCTAGGTTTACAGTCTCGAGCTCATCCACGTGAAATTATGACTGAAGTCCTTAAAGCCCTACGAGAGCTCAATGTGGCTTGGAAGAAGATTGGGCACTACAATATGAAATGTAGGTGGTTACCTGGAGTTCCAGGCCATCATGAAGGCATGATTAACAACCCTGTGCATAATAATCACTACTTTGGGGACGAGTCTACCATCATTGAAAACGACGGCGTCGTAAAATCGCCGAATGTTATAAAGTTTGAAGTTCAGCTCTACAAAACACGTGAAGAGAAGTATTTGCTTGATCTACAGAGGGTTCAAGGCCCCCAGTTCCTTTTCCTGGATCTTTGTGCTGCCTTCCTTGCACAGCTCCGAGTCCTCTAA 2253 45.85 MIDGARRPATGGWFMEEGRVSRRRREGFEEVRFAASVFHENIRDADFAKGLAATVGLRLAVETTTRPFVLETDSMQWRTDVTEYGWKKARHVSWACWLRKECMSFSGEEGKMIILSSSSRRPIIVPKHREGSLEGLGLSYEFYRSVVTPIGVQNARLGADLRSLLFHASVPTFIATPRCPLPSVATSIQLFLPQIYTLHHPHSQVPICWFAIHFVSISVRCPSCNLGGVFPERSQMDGPTGRSGGGVDMNLPNYKLGKTLGIGSFGKVKIAEHALTGHKVAIKILNRRKIKNLDMEEKVRREIKILRLFMHPHIIRLYEVIETPGDIYVVMEYVKSGELFDYIVEKGRLQEDEARNFFQQIISGVEYCHRNMVVHRDLKPENLLLDSKCNVKIADFGLSNIMRDGHFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSSGARELIPSMLVVDPMKRITIPEIRQHPWFQAHLPRYLAVPPPDTMQQAKKIDEDILQEVVKMGFDRNQLVESLRNRIQNEATVAYYLLLDNRFRVSSGYLGAEFQETMETGFNRMHPGDPTSPAVGHRLPGFMDYQGMGLRSQFSVERKWALGLQSRAHPREIMTEVLKALRELNVAWKKIGHYNMKCRWLPGVPGHHEGMINNPVHNNHYFGDESTIIENDGVVKSPNVIKFEVQLYKTREEKYLLDLQRVQGPQFLFLDLCAAFLAQLRVL 750
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35629490 35642398 - Lag0016279.1 Lac12g1907 590504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1907 750 Gene3D Kinase associated domain 1, KA1 630 748 - -
Lac12g1907 750 FunFam Non-specific serine/threonine protein kinase 630 748 - -
Lac12g1907 750 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 701 749 IPR001772 -
Lac12g1907 750 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 250 525 - GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Lac12g1907 750 Pfam UBA/TS-N domain 528 564 IPR015940 -
Lac12g1907 750 FunFam Non-specific serine/threonine protein kinase 245 584 - -
Lac12g1907 750 SMART serkin_6 254 506 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1907 750 SMART uba_6 529 566 IPR015940 -
Lac12g1907 750 SUPERFAMILY KA1-like 563 749 IPR028375 -
Lac12g1907 750 ProSitePatterns Protein kinases ATP-binding region signature. 260 283 IPR017441 GO:0005524(InterPro)
Lac12g1907 750 Gene3D Transferase(Phosphotransferase) domain 1 247 584 - -
Lac12g1907 750 FunFam Non-specific serine/threonine protein kinase 245 333 - -
Lac12g1907 750 SUPERFAMILY Protein kinase-like (PK-like) 251 524 IPR011009 -
Lac12g1907 750 ProSiteProfiles Protein kinase domain profile. 254 506 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1907 750 CDD AMPKA_C 624 747 - -
Lac12g1907 750 CDD STKc_AMPK_alpha 251 506 - -
Lac12g1907 750 CDD UBA_SnRK1_plant 528 568 - -
Lac12g1907 750 Pfam Kinase associated domain 1 707 749 IPR001772 -
Lac12g1907 750 Pfam Protein kinase domain 254 506 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g1907 750 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 527 567 IPR015940 -
Lac12g1907 750 ProSitePatterns Serine/Threonine protein kinases active-site signature. 373 385 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2288 Lac-Chr10:34990962 Lac12g1907 Lac-Chr12:35629490 1.10E-25 dispersed
Lac10g3146 Lac-Chr10:45719062 Lac12g1907 Lac-Chr12:35629490 1.10E-43 dispersed
Lac12g1907 Lac-Chr12:35629490 Lac1g3541 Lac-Chr1:54641919 8.60E-73 dispersed
Lac8g0818 Lac-Chr8:15503839 Lac12g1907 Lac-Chr12:35629490 4.70E-11 dispersed
Lac9g2814 Lac-Chr9:46198051 Lac12g1907 Lac-Chr12:35629490 2.20E-44 dispersed
Lac12g1907 Lac-Chr12:35629490 Lac9g2932 Lac-Chr9:47112424 3.90E-73 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85816 PF00069 Pkinase 9.20E-80 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1907 K07198 - csv:101211720 1006.13