Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1917 ATGGCTTTTTATTCAACACCATATTCCAATTTTTCATCTTCAAGTTATACCCCTTTAAATGAAAATTCTTCCTTGGAAAGCATAGTTCAAAATTATATTGAGGAGTCTAGAGCGAGGAGTCTAAAAATTGATGAAATCATAAGAGGACTTCAAGCTCCACAGGAAGTTAGTGAGGTGGGATCCACTTCCATAAGTTGTCTAGTGAGTCATGTGGCCGATGATTCATTGGCACCCATTCATGAGCGTAGTTCTTTCGATCTTGATGAGGATGAGCAGTTAGGGGTGAGTTGCATGAATAGTGGGGATGAATTGGAGAGTTGGAGCACCTATCAAGAACATGGTTGTGAGGAAGAAAAAGAAAATGAGCTTGTAGTGTCAGAGGAAGTTCAGGAGAAGACACCTATACAGGTTTACTACGACAACAAGGTTGCCATCTGTATAGCTCATAATCCAGTTCAACATGATAGGACAAAGCATATTGAAGTTGACAATCACTTCATAAAGGAAAAAATTGATATTGGTTATTATTGTCAGATACCTAACAAATTGGTATCAGTGGACGTGGAATCCTGGGGAAAACAAGGAGTATGGCTCAGAAACAGACTGAAGAGAGAGGGAACTACATCTGAGATCAAGCCAACGGAAGTCAATCAAATTCAGAAGGAGATACAAGGAGGTGATAGATGCAAGTTAAAATTGTTGGATATTCCAGTGTTCGCCGGTGAGAACCCAAACTCTTGGTTTTTTCGGGCGAAGAGGTACTTTGAAATACACCAACTAACAGACGCGAAAAAGATCCCAGCCGTCATCATTAGTTTCGACCATGAAGTGGTTGACTGGTACCGCTGGGAGACGAGCCAAGAGAAGATCCAAACATGGGATCAACTAAAGGACAAAATATTTGAACGTTATCGACGTTCCCAAGAGGGAAGTTTATGCGCGAGGTTTTTAGCTGTGAAGCAAGAAAGCACAGTGGCCGACTTCAAGAAGAGGTTTGAAATATACGCCGCGCCAGTCCCAGAGTTGCCACTGGTGGTGTTAGAAAACACCTTTCTAAATGGGCTCAACCCTACAGTGCTCGCAAAGGTGAATCGATGGGCTCTGAGATCAACAGGGCGACCCATCAAGGGGGAAATAAGGTGTCTGGCGGAAATACGCCCGAACCTACTAGCAAATGAAGTGATACTCTGCAGATACACACTATTACTATATCAGAAAAGGGAGGATTTCAATGCAAGGACATTCCCACTTGCAGATATGACAGATGTCGAGTTTAAAGAAAAACGGGAAAAGAGGTTATGCTTCAAATGTGATGAAAAGTACACGCCTAACCATCGGTGCAAGAGCAAAGATATAAGGGAACTTCGAGTTTTGTTGGTTAGCGAGGAAGGAGAGATCAAACTTGTGCAAGAAAGCGCAGCTGAAGAAGAGGAAATTGAGTTGAATAACTTAGAGGCCTCAAACATCGACCGCGTAGAATTAGATCTTAAGTCGATTGTTGGTTTTTCGACCCCTGGTACAATGAAAGTGAGAGGAATGGTCGAAGGGAAAGAGGTGGTGGTGCTCATCGACTGCGGACCAACACATAACTTCCATCTCCCAGAAGAGCGCCGCCGTCAGGAGAGTGGAAGCGCCGTCGCCGATCGTCGGAAAACGCCGCGCGTGAGTCACACGGCCGCCGAAGGGATCTGCAGCCGCCGCCACGCGCCGGCACGTGAGGGCGCGTGGGCCGTCCGTTTCTGTTTCCGCCGCCTGGGTTCGTCTCGCCTCGTGATTTCCGGCCAGCCTTTTTTCAGCGGTTTTAAGCTACCAATGGCTGAGCTGAAACCTTTGGTCATATCTAATGGAGTTCCCCTTTCTTCGAAGTTCACAGAACATAAGTTAAATGGCTCCAATTACTATGAATGGAGTCGTACAATTCGGTTTTATCTACGAAGCACTGAGATGGATGACCATATCACTGAGGATCCGCCAGAGGATGACACAAAGAAGAAGGTTTGGCTTAGAGATGATGCTCGCTTGTACTTGGGTATAAAGAATTCTATAGAAAACGAGATACTTGGTTTGTTTAATCATTGTGATTCAGTGAAAGAACTACTAGCATTCACAGAGTTTTTATACTCAGACTCTGGTGCCACAGCCCATATGACAGGTAATTCTAGCCTATTTTCTACCTCTTTGTCACCTGCACTTTCTCCGACTGTCACTTTGGCAGACGGATCAACATCATCTGTTCTTGGTTATGGCACCATTGATCTCACACCTTCTCTTCATTTGTCTTCTGTTTTACATTTGCCTAAACTTTCTTTTAACTTGATTTCTGATCGTATGACGAAGAAGATTATTGGTAAAGGATATGAGTCTGGAGGTCTTTACATCTTTGATCACCAACTACCGAAAGCTGTGGCATGTTCTGGAGTTGCCTCCCCATTTGAAATTCATTGTCGTTTGGGTCATCCTTCTTTGTCTGTGTTGAAGAAGCTTTATCCCGCTTTTCAGTCTTTGTCGTCTTTAAATTGTGAGTCTTGTCAGTTTGCTAAATTTCATCGTCTTAGCTCGAGTCCTAGAGTCAATAAACGAGCTAGTGCTCCCTTTGAATTAGTTCATTCTGATGTTTGGGGTCCGTGTCCAGTATTGTCCAAAACTGGATTTCGTTATTTTGTTACTTTGTTGACGACTACTCTCGTCTAA 2691 43.85 MAFYSTPYSNFSSSSYTPLNENSSLESIVQNYIEESRARSLKIDEIIRGLQAPQEVSEVGSTSISCLVSHVADDSLAPIHERSSFDLDEDEQLGVSCMNSGDELESWSTYQEHGCEEEKENELVVSEEVQEKTPIQVYYDNKVAICIAHNPVQHDRTKHIEVDNHFIKEKIDIGYYCQIPNKLVSVDVESWGKQGVWLRNRLKREGTTSEIKPTEVNQIQKEIQGGDRCKLKLLDIPVFAGENPNSWFFRAKRYFEIHQLTDAKKIPAVIISFDHEVVDWYRWETSQEKIQTWDQLKDKIFERYRRSQEGSLCARFLAVKQESTVADFKKRFEIYAAPVPELPLVVLENTFLNGLNPTVLAKVNRWALRSTGRPIKGEIRCLAEIRPNLLANEVILCRYTLLLYQKREDFNARTFPLADMTDVEFKEKREKRLCFKCDEKYTPNHRCKSKDIRELRVLLVSEEGEIKLVQESAAEEEEIELNNLEASNIDRVELDLKSIVGFSTPGTMKVRGMVEGKEVVVLIDCGPTHNFHLPEERRRQESGSAVADRRKTPRVSHTAAEGICSRRHAPAREGAWAVRFCFRRLGSSRLVISGQPFFSGFKLPMAELKPLVISNGVPLSSKFTEHKLNGSNYYEWSRTIRFYLRSTEMDDHITEDPPEDDTKKKVWLRDDARLYLGIKNSIENEILGLFNHCDSVKELLAFTEFLYSDSGATAHMTGNSSLFSTSLSPALSPTVTLADGSTSSVLGYGTIDLTPSLHLSSVLHLPKLSFNLISDRMTKKIIGKGYESGGLYIFDHQLPKAVACSGVASPFEIHCRLGHPSLSVLKKLYPAFQSLSSLNCESCQFAKFHRLSSSPRVNKRASAPFELVHSDVWGPCPVLSKTGFRYFVTLLTTTLV 896
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 35803441 35812944 - Lag0016289.1 Lac12g1917 590514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1917 896 Pfam Pol polyprotein, beta-barrel domain 707 774 IPR054722 -
Lac12g1917 896 MobiDBLite consensus disorder prediction 1 20 - -
Lac12g1917 896 Pfam Retrotransposon gag protein 279 357 IPR005162 -
Lac12g1917 896 PANTHER TRANSPOSASE, PUTATIVE-RELATED 813 890 - -
Lac12g1917 896 Coils Coil 467 487 - -
Lac12g1917 896 CDD RNase_HI_RT_Ty1 129 171 - -
Lac12g1917 896 Pfam GAG-pre-integrase domain 790 847 IPR025724 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1917 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac11g1142 Lac-Chr11:14508397 Lac12g1917 Lac-Chr12:35803441 8.80E-37 dispersed
Lac11g1389 Lac-Chr11:22804055 Lac12g1917 Lac-Chr12:35803441 6.50E-19 dispersed
Lac11g1592 Lac-Chr11:27733457 Lac12g1917 Lac-Chr12:35803441 8.70E-27 dispersed
Lac12g1917 Lac-Chr12:35803441 Lac1g1499 Lac-Chr1:36108884 6.20E-62 dispersed
Lac13g2181 Lac-Chr13:33299426 Lac12g1917 Lac-Chr12:35803441 1.50E-16 dispersed
Lac12g1917 Lac-Chr12:35803441 Lac1g0634 Lac-Chr1:15270892 2.50E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g940 . Blo12g00105 Bda03g01137 . Bpe04g01080 . . . . . . . Car06g01056 Car14g01706 Sed02g1524 Cpe08g00410 Cpe03g01606 Bhi01g00201 Tan10g0500 Cmetu06g1928 Lac12g1917 Hepe05g1774 . Lcy11g1789 Cla06g00779 Cam06g0833 Cec06g0848 Cco06g0858 Clacu06g0836 Cmu06g0807 Cre06g1588 . . . . Lsi05g01856 Csa02g00902 . Cme06g00369 . . Bda11g00339 . . . . . . Cmo06g01241 Cmo14g01960 . . . . . . Bhi12g01473 Tan06g2276 . . . . . Cla05g00333 Cam05g0365 Cec05g0369 Cco05g0370 Clacu05g0360 Cmu05g0345 Cre05g0409 Lsi09g01120 Csa03g01081 Chy06g00350 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011539 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 0 2 14 0 0 0 0 0 16