Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1942 ATGGCGGAATTTCTCGATTTGGAAGCACAGGACGGTGTCCGGATGCCGTGGAATGTGGTGCCCGGGACCAAGCAAGAAGCTAGCAACTGCATAGTTCCAGTTTCCGCCATGTACACGCCGATCAAAGCCTTTCCGAACATGCCGGTGCTACCTTACTCTCCGCTTCGATGTCGTACTTGTCGCTCAATTCTCAATCCGTTTTCCATTGTTGATTTCGCTGCGAAGATTTGGATCTGTCCGTTTTGCTTTCAGCGGAATCATTTCCCTCCTCATTACGCTTCTATTTCCGATGATAACCTTCCGGCGGAGCTTTTCCCGCAGTATACTACTATTGAATACGAGTCGACTGCGGAAACGCCGTCTTCGGTTCCTCCGGTGTTCATGTTTGTGTTGGATACTTGTATAATTGAAGAGGAGATTGTGTTTTTGAAATCTGCTTTGTCTCAGGCTGTTGATCTGCTTCCTGATATTTCTTTGGTTGGACTCATTACGTATGGCACTTATGTTCACGTTCATGAATTGGGGTTCGGTCAGATTCCGAAGACGTATGTGTTTAAGGGCTCGAAGGATGTGTCCAAGGAGCAGCTGCTGGAGCAGATGAACTTCTTTCTCAAAAAGCCCAAGCCTCCCACTGGTGTCATTGCTGGTGCTAGAGATGGACTTTCGACTGAGAGTATTGCTCGCTTTTTGCTGCCTAAGTCTGAGTGCGAGTTTGCTCTCAATTCAGTTTTGGAGGAGCTGCAGAAAGACCCTTGGGCAGTTCCAGCGGATCAACGAGCCCCGAGGTGCACTGGCACTGCCCTAAGCATTGCCGCCAGCTTGCTAGGCGCTTGTGTTCCTGGTTCAGGAGCAAGAATCTTAGCATTTGTTGGTGGGCCATCGACCGACGGACCGGGTGCTATTGTGTCTAAAAACTTATCTGAACCAATTCGGTCTCACAAGGACCTGGATAAAGATTCTGCCCCTCATTTTCATAAAGCTGTGAAGTTCTATGAGGGACTCTCAAAGCAGCTAGTTCATCAAGGACATGTACTTGATCTTTTCGCTTGTGCTCTTGACCAGGTCGGTATTGCTGAAATTAAAGTTGCAGTTGAAAAGACTGGAGGGCTTGTTGTGCTTGCAGAAAGTTTTGGCCACTCAGTTTTTAAGGATTCACTTAAACGTGTGTTTTCTGGAGAATATGATCTTGGCTTATCATCAAATGGTATATTTGAGATCAATTGCTCAAAGGATATAAAAGTTCAGGGAGTTATTGGTCCCTGTGCATCCCTTGAAAAGAAAGGTCCTTTGTGTTCAGACACTGTCATTGGTCAAGGAAATACAAATGCATGGAAAATGTGTGGTCTTGATAAAGCAACAACTTTGAGTCTCATATTTGAAATTGTCAAAAAGGAGAGCACAGATGCTGCTGTTCAATCTGCCAGCAATCAGTTTTACTTTCAATTTTTGACGTATTATCAGAACAACAGTGGTCAAATGAGACTTCGTGTTACAACTCTTTCTAGAAGATGGGTTGCTGGACCTGGAAGCATACAGGACTTGATTGCGGGGTTTGACCAAGAAGCTGCTGCTGCAATCATGGCACGTCTAGTTTCCTTCAAGATGGAAAATGAGGCAGAGTTTGATCCAATAAGATGGTTGGATAAATCATTGATTCATCTTTGTTCCCGTTTTGGAGATTATCAGAAGGATACTCCCTCTTCATTCAGCTTATCTCCACGTTTTTCAATATTCCCTCAGTTTATCTTTCATTTACGACGATCTCAGTTTGTGCAGGTTTTTAATAACAGTCCTGATGAGACTGCGTACTTCAGAATGATCCTGAACCGTGAGAATGTTGCTAATTCTGTTGTAATGATCCAACCGTCATTGATTTCTTACACATTTCATTCAGCCCCAGAACCGGTTCTTCTTGATGTAGCTGCCATTGCAGCTGACAGGATTCTCCTATTGGATGCATATTTCACTGTTGTTATCTTCCACGGGGCAACTATTGCTCAATGGAGAAAAGCTGGGTATCATAATCTGCCTGAACATCAGGCGTTTGCTCAGTTGCTTCAAGTTCCGCGTGATGATGCAGAAGCAACGATTAAGGAAAGATTTCCAGTACCACGTTTGGTGATCTGTGATCAGCATGGCTCGCAGGCACGTTTCCTTCTGGCGAAGCTGAATCCATCAGCCACCTATAACACTGAATCTCCCCTTCCTGGCGGAGATATCATCTTCACCGACGACGTCAGTTTCGAAGTGTTCTTGGATCATCTACAGAGATTAACCGTTCAATAA 2286 44.79 MAEFLDLEAQDGVRMPWNVVPGTKQEASNCIVPVSAMYTPIKAFPNMPVLPYSPLRCRTCRSILNPFSIVDFAAKIWICPFCFQRNHFPPHYASISDDNLPAELFPQYTTIEYESTAETPSSVPPVFMFVLDTCIIEEEIVFLKSALSQAVDLLPDISLVGLITYGTYVHVHELGFGQIPKTYVFKGSKDVSKEQLLEQMNFFLKKPKPPTGVIAGARDGLSTESIARFLLPKSECEFALNSVLEELQKDPWAVPADQRAPRCTGTALSIAASLLGACVPGSGARILAFVGGPSTDGPGAIVSKNLSEPIRSHKDLDKDSAPHFHKAVKFYEGLSKQLVHQGHVLDLFACALDQVGIAEIKVAVEKTGGLVVLAESFGHSVFKDSLKRVFSGEYDLGLSSNGIFEINCSKDIKVQGVIGPCASLEKKGPLCSDTVIGQGNTNAWKMCGLDKATTLSLIFEIVKKESTDAAVQSASNQFYFQFLTYYQNNSGQMRLRVTTLSRRWVAGPGSIQDLIAGFDQEAAAAIMARLVSFKMENEAEFDPIRWLDKSLIHLCSRFGDYQKDTPSSFSLSPRFSIFPQFIFHLRRSQFVQVFNNSPDETAYFRMILNRENVANSVVMIQPSLISYTFHSAPEPVLLDVAAIAADRILLLDAYFTVVIFHGATIAQWRKAGYHNLPEHQAFAQLLQVPRDDAEATIKERFPVPRLVICDQHGSQARFLLAKLNPSATYNTESPLPGGDIIFTDDVSFEVFLDHLQRLTVQ 761
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36197471 36208968 + Lag0016314.1 Lac12g1942 590539

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1942 761 SUPERFAMILY C-terminal, gelsolin-like domain of Sec23/24 622 761 IPR036180 -
Lac12g1942 761 FunFam Protein transport protein SEC23 621 725 - -
Lac12g1942 761 SUPERFAMILY Helical domain of Sec23/24 519 621 IPR036175 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Lac12g1942 761 Gene3D von Willebrand factor, type A domain 124 398 IPR036465 -
Lac12g1942 761 FunFam Protein transport protein SEC23 124 398 - -
Lac12g1942 761 Pfam Gelsolin repeat 632 719 IPR007123 -
Lac12g1942 761 Pfam Sec23/Sec24 trunk domain 123 390 IPR006896 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Lac12g1942 761 CDD Sec23_C 611 731 IPR037550 GO:0030127(InterPro)|GO:0090114(InterPro)
Lac12g1942 761 Gene3D - 51 110 - -
Lac12g1942 761 FunFam Protein transport protein SEC23 516 642 - -
Lac12g1942 761 Pfam Sec23/Sec24 beta-sandwich domain 400 505 IPR012990 -
Lac12g1942 761 SUPERFAMILY vWA-like 123 391 IPR036465 -
Lac12g1942 761 Gene3D Sec23/Sec24 helical domain 516 758 - -
Lac12g1942 761 Gene3D - 8 502 - -
Lac12g1942 761 FunFam Protein transport protein SEC23 388 505 - -
Lac12g1942 761 SUPERFAMILY beta-sandwich domain of Sec23/24 4 518 - -
Lac12g1942 761 FunFam Protein transport protein SEC23 51 110 - -
Lac12g1942 761 Pfam Sec23/Sec24 zinc finger 54 92 IPR006895 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
Lac12g1942 761 Pfam Sec23/Sec24 helical domain 519 617 IPR006900 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0030127(InterPro)
Lac12g1942 761 Gene3D Severin 621 725 IPR029006 -
Lac12g1942 761 PANTHER PROTEIN TRANSPORT PROTEIN SEC23 4 761 IPR037364 GO:0005096(PANTHER)|GO:0030127(PANTHER)|GO:0070971(PANTHER)|GO:0090110(PANTHER)
Lac12g1942 761 SUPERFAMILY Zn-finger domain of Sec23/24 45 116 IPR036174 GO:0006886(InterPro)|GO:0006888(InterPro)|GO:0008270(InterPro)|GO:0030127(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1942 K14006 - - csv:101211017 1482.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1942 Lac-Chr12:36197471 Lac7g1059 Lac-Chr7:9350681 2.30E-299 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1190 . . . . . . . . . . . Cma14g01465 . Car14g01301 . . Cpe03g01233 . . . . . . . . . . . . . . . . . . . . . Cme07g01901 . Blo07g00070 Bda11g00442 . . Bpe13g00734 . Bma06g01423 Sed09g0135 . Cmo14g01504 . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
Vvi15g136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed09g0135 . . . . . . . . Bhi12g02569 Tan06g2212 Cmetu10g0535 Lac12g1942 Hepe03g0423 . Lcy13g0545 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011146 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 1 1 31