Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1943 ATGGATACTTTAAACTTAGGCTCCGCCTCTCACTTTGTTGACCAGCTTCAGCAACGCCCTGATCTCCACTTAGAAACGCCGCCAAATTCCGACCATGTCACCAATCTCAACCACTTCAACGGCGGCAGCGGCTCCGGCGGTAGCGGTGATGTCATGGTCCGTCGCCCCAGGGGCCGCCCGGCCGGCTCCAAGAACAAGCCGAAGCCCCCCGTGATCATCACGCGCGAGAGTGCCAACACGCTCCGAGCTCACATCTTGGAGGTCGGTGGCGGCTGTGACGTGTTCGAGGCGGTGGCTGGCTACGCGCGAAGGCGGCAACGGGGGATCTGTGTTTTGAGTGGGAGTGGGATAGTGAATAATGTTAGCTTGCGGCAGCCGACGGCAGCGGGATCGGTGTTGACGCTCCAAGGGAGGTTTGAGATTTTGTCGTTGTCGGGATCTTTCTTGCCTCCGCCTGCTCCACCTGGTGCTACTAGCCTCACGATCTTCTTGGCCGGAGGACAAGGACAGGTGGTCGGAGGAAATGTGGTGGGAGCTTTGATCGCGTCGGGGCCGGTCATCGTCATAGCATCGTCGTTCAGCAACGTTGCATACGAGAGGTTGCCGTTGGACGAAGAAGAATTGCCGATGCAGGCGGGTGGCGACGGGGACGGAGGCGACGGTGGCGGCGACAGCCACAGCAACCCTTTTCCGGATGCATCTTCCGGGTTGCCCTTTCTTAACCTGCCTATGAACATGCCAAATCAGAATCAATTTTTCGGTTGA 765 58.56 MDTLNLGSASHFVDQLQQRPDLHLETPPNSDHVTNLNHFNGGSGSGGSGDVMVRRPRGRPAGSKNKPKPPVIITRESANTLRAHILEVGGGCDVFEAVAGYARRRQRGICVLSGSGIVNNVSLRQPTAAGSVLTLQGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGNVVGALIASGPVIVIASSFSNVAYERLPLDEEELPMQAGGDGDGGDGGGDSHSNPFPDASSGLPFLNLPMNMPNQNQFFG 254
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36229761 36230673 + Lag0016315.1 Lac12g1943 590540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1943 254 MobiDBLite consensus disorder prediction 36 70 - -
Lac12g1943 254 CDD DUF296 82 165 IPR005175 -
Lac12g1943 254 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Lac12g1943 254 ProSiteProfiles PPC domain profile profile. 78 214 IPR005175 -
Lac12g1943 254 MobiDBLite consensus disorder prediction 208 242 - -
Lac12g1943 254 PIRSF ESCAROLA 3 253 IPR014476 GO:0003680(InterPro)
Lac12g1943 254 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 211 - -
Lac12g1943 254 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 41 219 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Lac12g1943 254 FunFam AT-hook motif nuclear-localized protein 81 208 - -
Lac12g1943 254 Gene3D - 81 212 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1943 Lac-Chr12:36229761 Lac5g0267 Lac-Chr5:2603522 6.30E-76 dispersed
Lac11g2404 Lac-Chr11:40314016 Lac12g1943 Lac-Chr12:36229761 6.60E-76 wgd
Lac12g1943 Lac-Chr12:36229761 Lac5g0266 Lac-Chr5:2586880 7.80E-10 wgd
Lac12g1943 Lac-Chr12:36229761 Lac7g0365 Lac-Chr7:2817085 3.80E-89 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1943 - - - 0.0