Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g1950 | ATGGGTGTTGTTTTCTTTTTCAGGTATGGACAGACAGGAATGTACAAGGCGTTGATGTTTGGAAATCCAAGTGTGATAGTGACTTCAGCAGAAGGCTGCAAAAGAGTTTTGAACGACGACGAAGCGTTTGGCCCAGGGTGGCCTCGTTCCACCATGAAACTCATCGGAGAAAACTCCTTCATCGGCATTTCTTACCAAGAACACAAGCGTCTCCGTCGCATAACGGCTGCTCCTGTCAATGGCTACGAGGCCCTGTCCACCTACCTCACCTACATCGAAAGCATTGTGCTTACTTCCTTGCAAAAATGGCCTTCCATGGGACAGATCGAGTTCTTGACTGAGCTGCGTAAGCTCACCTTCAAGATCATCATGTACATTTTCCTTAGCTCTGAGAGCCAGCCTGTCATGGAGGCCTTGGAGAGGGAGTACACGTCCTTGAACTACGGCGTCAGAGCTATGGCTATCGACGTTCCCGGTTTCGCTTACCATAAAGCACTCAAGGCACGAAAGAATCTTGTCGCGACGTTTCAATCGATCGTGAGTGAGCGAAGGAAGGAAAGAGAGAGCAATTTGGCAACAAAGCAAAGAGATATGATGGATTCTTTGCTAGATGCTGAAGATGAGAATGGTAGAAGGTTGAGTGATGAAGAGATTATTGATGTCTTGATAATGTACTTGAATGCAGGCCATGAATCTTCAGGTCACACTATGATGTGGGCAACAATTTTCTTGCAACAACATCCCCAATTCCTTGAAAAGGCCAAGGCAGAACAAGAAGAGGTACTAAGGAAGCGACCTCCCGGGCAAAAGGGTTTAACTTTGAAAGAAGTTCGAGAAATGGACTATCTTTCGAAGGTGATCGATGAAACTCTACGAGTGGTAACATTCTCACTCACTGTTTTTCGAGAGGCAAAGCATGATGTCAACATTAGTGGTTATACCATTCCAAAAGGTTGGAAAGTGCTAGTTTGGTTTAGAAGTGTTCACTACGATCCCGAAACTTATCCGAACCCGAAAGAATTTGATCCTTCAAGATGGGATGATTTTACACCAAAAGCAGGAAGCTTTCTTCCATTCGGAGCGGGAAGTAGATTATGTCCTGGAAATGATCTAGCGAAGTTGGAAATCTCCATCTTTCTCCACTATTTTCTCCTCAATTATCGGTTGGAAAGGGATAATCCAAAAAGTCCAGTGAGGTATCTTCCCCATTCAAGGCCTAAAGATAACTGTTTGGCAAGGATCAAGAGAGTTGGTGCTCCACTTGATTGA | 1269 | 44.84 | MGVVFFFRYGQTGMYKALMFGNPSVIVTSAEGCKRVLNDDEAFGPGWPRSTMKLIGENSFIGISYQEHKRLRRITAAPVNGYEALSTYLTYIESIVLTSLQKWPSMGQIEFLTELRKLTFKIIMYIFLSSESQPVMEALEREYTSLNYGVRAMAIDVPGFAYHKALKARKNLVATFQSIVSERRKERESNLATKQRDMMDSLLDAEDENGRRLSDEEIIDVLIMYLNAGHESSGHTMMWATIFLQQHPQFLEKAKAEQEEVLRKRPPGQKGLTLKEVREMDYLSKVIDETLRVVTFSLTVFREAKHDVNISGYTIPKGWKVLVWFRSVHYDPETYPNPKEFDPSRWDDFTPKAGSFLPFGAGSRLCPGNDLAKLEISIFLHYFLLNYRLERDNPKSPVRYLPHSRPKDNCLARIKRVGAPLD | 422 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 36326893 | 36330028 | - | Lag0016322.1 | Lac12g1950 | 590547 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g1950 | 422 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 359 | 368 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Lac12g1950 | 422 | FunFam | Ent-kaurenoic acid oxidase | 3 | 417 | - | - | |
| Lac12g1950 | 422 | CDD | CYP90-like | 8 | 416 | - | - | |
| Lac12g1950 | 422 | Pfam | Cytochrome P450 | 14 | 395 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PANTHER | CYTOCHROME P450 26 | 8 | 394 | - | GO:0004497(PANTHER)|GO:0005783(PANTHER)|GO:0016125(PANTHER)|GO:0016491(PANTHER)|GO:0051777(PANTHER) | |
| Lac12g1950 | 422 | SUPERFAMILY | Cytochrome P450 | 8 | 415 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | Gene3D | Cytochrome P450 | 5 | 417 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | P450 superfamily signature | 357 | 366 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | P450 superfamily signature | 366 | 377 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | P450 superfamily signature | 285 | 296 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | P450 superfamily signature | 228 | 245 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | E-class P450 group I signature | 356 | 366 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | E-class P450 group I signature | 237 | 263 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | E-class P450 group I signature | 324 | 348 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Lac12g1950 | 422 | PRINTS | E-class P450 group I signature | 366 | 389 | IPR002401 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g1950 | Lac-Chr12:36326893 | Lac4g1964 | Lac-Chr4:39124398 | 1.50E-114 | dispersed | |
| Lac11g2386 | Lac-Chr11:40056778 | Lac12g1950 | Lac-Chr12:36326893 | 2.90E-60 | wgd | |
| Lac12g1950 | Lac-Chr12:36326893 | Lac5g0281 | Lac-Chr5:2776581 | 1.20E-111 | wgd | |
| Lac12g1950 | Lac-Chr12:36326893 | Lac7g0373 | Lac-Chr7:2868507 | 2.70E-180 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g1950 | K04123 | - | csv:101220640 | 712.605 |