Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g1976 ATGTCCTTCAATCAATCAAGGTCCGATAAGAACGAGAGCTACACTCAGTATCGCAAATCCGGGCGATCCAACAACTTCAATCCACAGCGAGGCTCTTCAGGCACTCACTCTAAGCCCGGCGGTGCCGGTGGGTCCGCCCCTTCTCCGTCGATCGCTTCTAATCGTAGTTTTAAGAAGACTAATAATGCTCAAGGAGGGCAATCTAGAGGAGGTCTTCCTACTGTAAATTCTACGGATTCGAGTAACGCTCCTAACCCGCGAGGGGTGCAAAATGGTGCAGTTGGCAAGCCTACAGAGGCACCACATACCCAGAGAAGCACCAGAGATGTTCCTAAAGCTCCAACTTCTCAGTCTTCCCCCTTGAGTTCTGATGGGGCTGCGCCCACTACCCCGGCAAGGGGTACAGGAGATCAATTCTCTTTTCAATTTGGGTCCATAAGTCCTGGATTCATGAATGGTATGCAGCTTCCAGTTAGGACTAGCTCAGCTCCTCCAAATTTAGATGAACAGAAACGTGACCAGGCACGCCATGAATCTTTTAGATCAGGTCCTCCAATGCCCATACCGTTAGTTCCTAAGCCACAGACACAAAGGAAGGATGGTGGAGCTGGTGATCAACCTAATACTGGACAGCAGTTACAACAGAAGGATGCTGGTATCATCAACCAGCCTAACACTGGGGATGCTCATACAGTTCAGAAGGCTAAAAAGGATGTGCAGGCATCACCAACTCATCCCACAAACCAAACTCAAAAGCCCAGCACTCCTATGTCTGGAATCTCTATGACAATGCCTTACCACCCGCCACAAGTACCTGTGCCATTTGGAGGCCCCAACCAACAGATGCAATCACAGGGCATAACCCCCAGTTCACTGCACATGTCCATTCCTGTGCCATTGCAGATTGGAAGCTCTCCTCAAGTGCAACAGCAAATGTTTGTTCCTGGTCTTCATCCCCATCCAATGCAGCCACAGGGGATCATTCATCAGGGACAGGGCCTGGGTTTTGCAACTCAAATAGGTTCTCAGTTGCCTCCTCAATTAAGCAACATAGGAATCAATGTAACTTCACAATACCCTCAACAGCAAGGAGGGAAATTTGGTGGCCCTCGTAAGTCCGCTGTTAGAATTACGGATCCAAAGACGCATGAAGAGTTAATATTTGATAACAAGCAAACAAATGCATATACTGATACTGGTTCTGCAGGCCCTAGGCCTCAATATAATCTTCCTTCTCAAAGTCAGCCTCTTCCCTATGCACCAAGTCATGCAATGAACTATTATCCCAATTCTTACAATCCCAATCCTTTATATTTTGCAAGCCCCAGTTCCCTTCCTTTACCTAGTGGTCAAACTGCACCAAATTCTCAGCCTCACAGATTTAATTATCCAGTTAGCCAGGGCTCTCAAAATGTGCCGTACATTGATCTTCATGTTAAGAAGCCTGGTGGAGGTCCAATGCATGGTATTACAGATCCATCTAATAGAGAGCATACTCGTGATACTCACAGTTTGCAACCCCCAGCTATCTCAGGAACAGTTCCCGTTACAATCAAAATGCCTACTGATCCTATAGGTGGCAAGGGTTCTGACTCATTGCCAAATAGATTACCTACGACTGAAGAAGGAAAATCACAAAAACCCTCAAGCCCATCTGTAGAATTAATCCCACCTTCTTCTCAAAGGGCAGTAGATACATCCTCGGAGAGTTCTGTACTTGAATCAAAAGTTGGAAGAGAACCATCGTTGATGAAGTCTTCACCTGCAGTATCTAAGCAGTCTACAGAACCTCCTGTGGTTTCACTTGACGGCCAAGATTCCAGCTCTGTGCAATCTTCATTGCCTGCTTCCTCCGAGGAGTCCGAGTTAGCTGGAACACATAATGAAGGAAGAAGGGAAAATCTATCGAGGTCTGACTCATACAAGGATCATCAGAAGAAAACAAGCAAGAAAGGATACAACGAATCACAGCATCAGATTAGTGGACAATCTTCATCAGCATTGGGACTGCCTGGTCAAGTGCAGGATATGACATCTCATTCTATAGTTTCTGAAGCAGTAGAAGCTAAATCTTCGACCATTCCTGTGGTTGTAGAAGGCAAGTCAGAATCAGTGAATGCCGTTACTTCTGATTCTTTAGAATCCAAGGATGCCATCTTGGCTTCTGTAGCTCATTCTTCTCCTGAAAATTCTGGTTTGGGGAATGTCAAGAACTCGGATCTCATTTCTGATGATAAGCAGGATACTTTAAAAGATAAACCTTCAGAACCTGTGCTACTGAAAACAGAAGAACAAGGACAAGCAACATCTTCTGAATTTCCTGTAGATCTTAAGAACTCTGAAAATCTTTCAGATCATGATGTTGCAAGACCTGTGGAGGTTGCTGAGAAAACAGAAAGGGAATTAATTGTGAGCTCAACTACTGTTAGCAACGAGGTTTCAACCTCTGAAGCTGCCCAAAGGGCTGTGGATGAACCTATGAGTTGTCATGCAGGAGTTGATGTGTCTGCTTCCATGAATTCTAGTCCAACTGTTCCTGAAAATTCTCAAGGTGACAGATTAGTTGTTGATTCTTCAGGTAAAGACAACAATATGAGTAGCAATGAAGTTGTTCTAAAAAAAGGTGTGGGATCAGACCAGCCATCTGAATCTGCTCTAAACCCGGGACTTTCAGAAGGAAAAAATGATGGGGAGGTGTTGGATACTGTTGGTAGCGGTGGCATTAGTTCACACTCTGTTTCTGGCACCAAGGATAAATCTGTTGTAGAGACGAGCAGGGTTAAGGGTACTACTGGAAAAGGGAAGAAGAAGCTGAAGGCAATTCTTCAAATGGCAGATGCTGCAGGAACAACTTCTGACCTTTACATGGCATATAAGCGACCTGAAGAGAAGAAAGAAACAGTAGCACATTCTGAGAGCATTGAGAGGACAGAAAGTAGATCTTCTAGTGTGGACACAGAGCAGGAATCCATTGAGGCTATTAAAGAAGATGTGGGTGCACAGAGTAAAGCTGAGCCTGATGACTGGGAAGATGCTGCTGACATTGCTACACCTAAACTGGAACCAGCTAATGGAGATGGTGCGGGTTCATCACTTGATGGAGACAGAATGGGAGATATGGCCAAGAAGTATTCTAGGGATTTTCTCCTCAAGTTTGCTGAGCAGTTTGTGGACCTTCCACATAACTTTGAAGTTACTTCTGATATAGAGTCCTTGATGAGTAGTCATGGCAATGCATCTCATCATTCTGATCGTGATTCATATCCTAGTCCTGGACGAGTTGATAGACCATCAAGTGGGGGATCACGGTTGGATCGTCGTGGTAGTAATTTGGTTGATGATGACAGATGGAGCAAATTGCCTGGCCCGTTTGCTTCAGGACAGGATCCACGTTTGGATCTAGCGTATGGAGCTAGTGCGGGTTTTCGACCTGGTCAAGGAGCCAATTTTGGTGTTCTAAGGAACCCCCGAGCACAGGCCCCTGTTCAATATTCTGGAGGAATACTTGCTGGTCCTATGCAGTCTATGGGACCACAGGGAGGGTTGCAAAGAAATAATTCTGATGCAGATAGGTGGCAACGAGCTACCAATTTTCAGCAGAAGGGTTTGATTCCTTCACCGCTGACACCCTTGCAGACTATGCACAAAGCTAAGAAGAAGTATGAGGTGGGTAAGGTGTCTGATGAAGAAGAAGCCAAGCAAAGACAATTGAAGGCTATACTAAACAAGCTAACTCCCCAGAACTTTGAAAAGCTCTTTGAGCAAGTAAAAGCTGTAAACATTGATAATGGTACAACGCTAACTGGAGTAATATCACAGATTTTTGACAAAGCTTTAATGGAGCCTACTTTCTGTGAAATGTATGCCAATTTCTGCTTTCATCTTGCTGGGGAACTGCCTGATTTAAGTGAAGACAACGAGAAGATTACTTTTAAGAGATTGTTACTCAACAAGTGTCAGGAGGAGTTTGAGAGAGGTGAAAAAGAACAGGAAGAAGCCAACAAAGTTGAAGAGGAAGGTGAGGTAAAGCAGTCTGAAGAGGAAAGGGAAGAAAAACGAATTAAGGCACGGAGAAGAATGCTAGGTAACATTAGATTAATAGGGGAGTTGTACAAGAAGAAGATGTTGACTGAAAGAATAATGCATGAATGCATCAAGAAGTTGCTGGGTGAATATCAGAATCCAGATGAGGAAGATGTTGAAGCTTTGTGCAAATTGATGAGCACAATTGGAGAGATGATAGATCATCCTAGAGCAAAAGATTATATGGATTCTTATTTTGATATTATGTCAAGGTTATCAAACAACATGAAATTGTCATCCAGGGTTCGGTTCATGCTAAAAGATTCAATTGATCTGAGGAGGAACAAATGGCAGCAGAGGAGGAAAGTAGAGGGCCCAAAAAGATTGAGGAAGTACACAGAGATGCTGCTCAAGAGCGTCAAGCTCAAACTGGCCCGTGGATATGGAAGTCAGGATGCTCGTCAAGATGAAAGACAGGCATATGAAGCTAGGACATTGTCTGTTACATTGCCTCATAGAGCGACTGGTGATGACTCTATTACTTTGGGTCCACAGGGTGGTCTGGCTCGAGGAATGTCTATTAGAGGACCACAACCAAGTTCTGCTGCTCCTGCTGATATATCCTCTCTTCAAGGAGAACTGAGAAGTGCACCAACAGCTTCTTTGAATGGCTATAGTTCTGCATCAGAGCGTGCAGCTTTAACTTCCAAAGAGGATCTAATTTCGAGACATATGCCGGAGAGATTTGCAGGTCCAACTTCATTTGACCATGGTCAAGATCGCTATTCAAATTATGGAAATAAGGATTTGAGACATTCAGGTCGGAGTTTCGATAGATCTCGCCCGATTTCTCCTGCCACACCACCGGGACCAACTTTGACTTCAAGTCCTCCTCCTGAAAAAGTATTGTCTGAAGATCGGTTGCGAGAATTGTCATTGACGGCAATCAAGGAGTTCTACAGTGCCAGAGATGAGAAGGAAGTAGCTATGTGCGTTAAAGACTTGAATTCCCCAGCCTTCCATCCAACCATGATCAGTCTCTGGGTCACAGATGCATTCGAGAGGACGGATTTGGAAAGGGATCTTTTGGCCAAGCTTGTTGTTAACCTCTCCAGGTCTAATGATGGCACATTGAATCAAGCTCATCTTGTTAAAGGGTTTGAAGCAGTTCTTTCCACTTTAGAAGATGCAGTAAACGATGCCCCAAGAGCTCCAGAGTATTTGGGTCGCATCCTTGCCAAAGTCATCACAGAAAGCATGGTTTCTTTGAGAGAAGTTGGAGATCTAATCTATCAAGGTGGAGAGGAACCTGGAGCCCTTCTTCAAGCTGGGCTTGCAGCTGATGTTCTTGGCAACGTCTTGAAAGCAATCAGAACAGAGAAAGGAGAAGGCTTCCTAAACGACATGCGCACGAACTCGAATTTGCGACTGGAGACGTTTCGGCCCCCCGACCCTATGAAATCAAGAGTCTTAGAGGAATTTATTTAG 5511 44.64 MSFNQSRSDKNESYTQYRKSGRSNNFNPQRGSSGTHSKPGGAGGSAPSPSIASNRSFKKTNNAQGGQSRGGLPTVNSTDSSNAPNPRGVQNGAVGKPTEAPHTQRSTRDVPKAPTSQSSPLSSDGAAPTTPARGTGDQFSFQFGSISPGFMNGMQLPVRTSSAPPNLDEQKRDQARHESFRSGPPMPIPLVPKPQTQRKDGGAGDQPNTGQQLQQKDAGIINQPNTGDAHTVQKAKKDVQASPTHPTNQTQKPSTPMSGISMTMPYHPPQVPVPFGGPNQQMQSQGITPSSLHMSIPVPLQIGSSPQVQQQMFVPGLHPHPMQPQGIIHQGQGLGFATQIGSQLPPQLSNIGINVTSQYPQQQGGKFGGPRKSAVRITDPKTHEELIFDNKQTNAYTDTGSAGPRPQYNLPSQSQPLPYAPSHAMNYYPNSYNPNPLYFASPSSLPLPSGQTAPNSQPHRFNYPVSQGSQNVPYIDLHVKKPGGGPMHGITDPSNREHTRDTHSLQPPAISGTVPVTIKMPTDPIGGKGSDSLPNRLPTTEEGKSQKPSSPSVELIPPSSQRAVDTSSESSVLESKVGREPSLMKSSPAVSKQSTEPPVVSLDGQDSSSVQSSLPASSEESELAGTHNEGRRENLSRSDSYKDHQKKTSKKGYNESQHQISGQSSSALGLPGQVQDMTSHSIVSEAVEAKSSTIPVVVEGKSESVNAVTSDSLESKDAILASVAHSSPENSGLGNVKNSDLISDDKQDTLKDKPSEPVLLKTEEQGQATSSEFPVDLKNSENLSDHDVARPVEVAEKTERELIVSSTTVSNEVSTSEAAQRAVDEPMSCHAGVDVSASMNSSPTVPENSQGDRLVVDSSGKDNNMSSNEVVLKKGVGSDQPSESALNPGLSEGKNDGEVLDTVGSGGISSHSVSGTKDKSVVETSRVKGTTGKGKKKLKAILQMADAAGTTSDLYMAYKRPEEKKETVAHSESIERTESRSSSVDTEQESIEAIKEDVGAQSKAEPDDWEDAADIATPKLEPANGDGAGSSLDGDRMGDMAKKYSRDFLLKFAEQFVDLPHNFEVTSDIESLMSSHGNASHHSDRDSYPSPGRVDRPSSGGSRLDRRGSNLVDDDRWSKLPGPFASGQDPRLDLAYGASAGFRPGQGANFGVLRNPRAQAPVQYSGGILAGPMQSMGPQGGLQRNNSDADRWQRATNFQQKGLIPSPLTPLQTMHKAKKKYEVGKVSDEEEAKQRQLKAILNKLTPQNFEKLFEQVKAVNIDNGTTLTGVISQIFDKALMEPTFCEMYANFCFHLAGELPDLSEDNEKITFKRLLLNKCQEEFERGEKEQEEANKVEEEGEVKQSEEEREEKRIKARRRMLGNIRLIGELYKKKMLTERIMHECIKKLLGEYQNPDEEDVEALCKLMSTIGEMIDHPRAKDYMDSYFDIMSRLSNNMKLSSRVRFMLKDSIDLRRNKWQQRRKVEGPKRLRKYTEMLLKSVKLKLARGYGSQDARQDERQAYEARTLSVTLPHRATGDDSITLGPQGGLARGMSIRGPQPSSAAPADISSLQGELRSAPTASLNGYSSASERAALTSKEDLISRHMPERFAGPTSFDHGQDRYSNYGNKDLRHSGRSFDRSRPISPATPPGPTLTSSPPPEKVLSEDRLRELSLTAIKEFYSARDEKEVAMCVKDLNSPAFHPTMISLWVTDAFERTDLERDLLAKLVVNLSRSNDGTLNQAHLVKGFEAVLSTLEDAVNDAPRAPEYLGRILAKVITESMVSLREVGDLIYQGGEEPGALLQAGLAADVLGNVLKAIRTEKGEGFLNDMRTNSNLRLETFRPPDPMKSRVLEEFI 1836
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 36659710 36668327 + Lag0016348.1 Lac12g1976 590573

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1589 1643 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 237 261 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 779 800 - -
Lac12g1976 1836 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4 GAMMA 774 1826 IPR045208 GO:0003729(PANTHER)|GO:0003743(InterPro)|GO:0003743(PANTHER)|GO:0016281(PANTHER)
Lac12g1976 1836 MobiDBLite consensus disorder prediction 697 712 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1099 1114 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 47 88 - -
Lac12g1976 1836 Pfam MIF4G domain 1235 1457 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1074 1131 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1 39 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 108 168 - -
Lac12g1976 1836 ProSiteProfiles MI domain profile. 1648 1772 IPR003891 -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 741 759 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 533 575 - -
Lac12g1976 1836 Gene3D - 1234 1470 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 834 873 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 447 466 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1326 1351 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 383 417 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1507 1552 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 801 818 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 724 740 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1603 1619 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 389 417 - -
Lac12g1976 1836 SUPERFAMILY ARM repeat 1644 1833 IPR016024 -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 962 1036 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 724 938 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 201 230 - -
Lac12g1976 1836 Coils Coil 1316 1355 - -
Lac12g1976 1836 SMART if4_15 1234 1457 IPR003890 GO:0003723(InterPro)|GO:0005515(InterPro)
Lac12g1976 1836 MobiDBLite consensus disorder prediction 1 262 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 624 653 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 762 778 - -
Lac12g1976 1836 Gene3D - 1641 1836 - -
Lac12g1976 1836 SMART ma3_7 1649 1763 IPR003891 -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 962 1015 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 586 623 - -
Lac12g1976 1836 Pfam MA3 domain 1652 1760 IPR003891 -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 654 688 - -
Lac12g1976 1836 FunFam Eukaryotic translation initiation factor 4G 1642 1835 - -
Lac12g1976 1836 SUPERFAMILY ARM repeat 1227 1459 IPR016024 -
Lac12g1976 1836 FunFam Eukaryotic translation initiation factor 4G 1234 1470 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 905 920 - -
Lac12g1976 1836 MobiDBLite consensus disorder prediction 480 712 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g1976 K03260 - - csv:101202754 3008.01
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g1976 Lac-Chr12:36659710 Lac2g0531 Lac-Chr2:3970705 2.30E-50 dispersed
Lac12g1976 Lac-Chr12:36659710 Lac7g0417 Lac-Chr7:3244527 1.20E-261 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g1317 . . . . . . . . Cmo08g00192 . . . . . . . . . . . . . . . Cla06g00101 Cam06g0114 Cec06g0113 Cco06g0112 Clacu06g0114 Cmu06g0112 Cre06g0882 . . . . . . . . . . . . . . . . Sed09g0151 . . . . Car08g00170 . . Cpe17g01080 Bhi12g02474 Tan06g2240 Cmetu05g1545 Lac12g1976 . . Lcy13g0854 . . . . . . . . . . Cme11g02437
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001352 1 10 2 2 2 2 3 2 2 2 2 2 3 3 2 3 2 4 3 2 2 3 2 2 2 2 2 3 2 1 75