Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2014 ATGGTTTCCGGCGACGGTGAACAGAGCCTCGTCCACAGCTTCCGAATCTCCTCCGTTGGTCCCGGCCACTCGATCGGCTCCGACGGCGCCTATCACCTGACCGGCCTCGATTTGGCGATGAAGCTCCATTACATCCACGGAATCTACTTCTTCGATTCCGACGCCAGTCGGTCGCTGACGGTGCCGCAGATCAAGGCGGCGACGTTCTCCCTGTTCAACGAGTACTACGTCACCTGCGGCCGGCTCCGGCGGGCGGATTCCGGCCGGCCGTTCATAAAGTGCAATGACTGTGGCGCTAGGTTTATTGAGGCGGAGTGCCGTACGACGGTGGCGGAATGGCTGGAGGTGATCGGAGACGATTGGTCAGCTCTGAAATTGCTGGTTTCGCAGAAGGTTATCGGACCGGAGCTGCACTTTTCTCCTCCCATTTTTTTGCAGGTGACGAGATTCAAATGCAAAGGAATCTCAATTGGGCTGAGCTGGGCCCACATCCTCGGCGACGCCTTCTCCGCCGCCGCTTTCATGAACTCTCTCACCAATCTCCTCCTCGGCGCCGCCGCCGTCGCCGACTCTCCTCCGCCGCTTCCCGGCGTCGGCACGATCATAACCACTCCGCCGCCCAAACCTCCACTCTCCGCCGCCAAACCCCCACTTTCCCTCCGGCTAGTCGACCCAGTCGGTGACCACTGGATTCCGACCAACAACTGCAAAATGGAATCATTTTCCTTCAATTTAAACGCGACCCAATTGACCAAATTACAGTCCCAAATGCCCCACAAAACCCCACCTTTCGAATCCATCTCCGCCGTTCTCTGGCAGACCATCGCCAAGCTCCGGCAGGCCTCCGATCCCACGACGGTGACTCTCTGCAAACTCGACCCAATTAAACAAAAGGGGAAGATAATTGGGAACGCCCAAAAGATCAGCACAGTCAAATCCACCGCCGCCGTCTCCGCCGCCGACCGGAGGAAGCTGGCGGAGCTGCTGGTGGCCGGCGCGGCGGAGGAAGAATCCCCGCTCATTGAAGAGGCTGTGGAGAGGGACGATGGAGTGAGTGATTTTCTTGTTTATGGGGCGAATTTGACATTTGTGAAATGGGATGAAGCTGACTTGTATGGAGATGGGATGGAACTGGATTTTGAGAGGCCCAAATTTGTGTACTACTCGCTGCACGGCGTCGGGGATGGCGGAGCGGTGGTGGTGGTTCCCGGGCCAGCGGATGACGGCGTCGGTGGCGGGGGGAGGTTTGTGACTGTGATTCTGCCGGAGAATGAAGTGGTGGGGCTGAAGGCTGAGTTGATGGCCAATGGAATGTTCCTAGAGAAACATTGA 1332 57.73 MVSGDGEQSLVHSFRISSVGPGHSIGSDGAYHLTGLDLAMKLHYIHGIYFFDSDASRSLTVPQIKAATFSLFNEYYVTCGRLRRADSGRPFIKCNDCGARFIEAECRTTVAEWLEVIGDDWSALKLLVSQKVIGPELHFSPPIFLQVTRFKCKGISIGLSWAHILGDAFSAAAFMNSLTNLLLGAAAVADSPPPLPGVGTIITTPPPKPPLSAAKPPLSLRLVDPVGDHWIPTNNCKMESFSFNLNATQLTKLQSQMPHKTPPFESISAVLWQTIAKLRQASDPTTVTLCKLDPIKQKGKIIGNAQKISTVKSTAAVSAADRRKLAELLVAGAAEEESPLIEEAVERDDGVSDFLVYGANLTFVKWDEADLYGDGMELDFERPKFVYYSLHGVGDGGAVVVVPGPADDGVGGGGRFVTVILPENEVVGLKAELMANGMFLEKH 443
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37063023 37068920 - Lag0016386.1 Lac12g2014 590611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2014 443 Gene3D - 11 213 IPR023213 -
Lac12g2014 443 Gene3D - 230 433 IPR023213 -
Lac12g2014 443 Pfam Transferase family 30 432 - -
Lac12g2014 443 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 30 423 IPR050317 GO:0016747(PANTHER)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2014 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2014 Lac-Chr12:37063023 Lac2g0784 Lac-Chr2:6077956 3.10E-78 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g929 . Blo12g00104 Bda03g01139 . Bpe04g01082 . Bma04g01163 . . . . . . . . . . . . . . . . . Cla06g00775 Cam06g0826 Cec06g0842 Cco06g0848 Clacu06g0829 Cmu06g0801 Cre06g1582 . Cone15ag0263 . . . . Chy05g00577 . . . . . . . . . Sed04g2086 . . . . . . . . Bhi12g01477 Tan06g2283 Cmetu05g0705 Lac12g2014 Hepe03g0377 . . . . . . . . . Lsi09g01123 . . Cme05g00735
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009078 1 1 2 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34