Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2039 ATGGCGGGCCTATCGCTCAAGTGCGGCGATTGTGGCGCACTCTTGAGATCCGTGGAAGAAGCTCAAGAGCACGCTGAACTCACTTCTCACTCCAACTTCTCCGAGTCCACCGAGGCTGTGCTCAATCTCGTCTGTGCTGCTTGCGGCAAGCCCTGCCGATCCAAGACGGAAAGTGATTTGCACACGAAACGGACTGGCCACACTGAGTTTACTGATAAGACTTTGGAGGCTGCAAAACCGATAAGCTTGGAGGCCCCGAAGGTAGCTGCGGAATCAGAAGATGGTGGGGATGCAAGTGCTAGTAAGTCTGAAGAAATGGTTGTGCCAGAGGTGAACAAGAATATATTAGAGGAACTTGAAGCTATGGGCTTCCCAACAGCACGAGCAACCCGTGCACTTTATTATTCTGGTAATGTCAGTCTTGAGGCTGCAGTCAATTGGGTAGTCGAACATGAGAATGATCCAGAGATAGATCAAATGCCTTTGGTTCCTAAGGATACAAAGGTTGAGGCTCCAAAGCCTTCTCTTACGTCTGAGCAACTGAAAGCAAAACAGCAGGAGCTAAGGGAACGGGCTCGGAAGAAAAAAGAGGAGGAAGAGAAGATAGCAGAGAGAGAAAGGGAAAAGGAGAGAATCCGATTTGGCAAGGAGCTTCTAGAAGCAAAAAGGATCGAGGAAGAAAATGAGAGAAAAAGAATATTAGCCTTGAGAAAAGCTGAAAAAGAAGAAGAGAAAAGAGCCAGAGAAAAAATTCGTCAAAAACTTGAAGAGGACAAGGCAGAAAGAAGACGGAGGCTTGGATTGCCACCAGAAGATCCTTCGACTGCAAAACCTGCAGCACCTGTTGTTGAAGAGAAAAAGATCTCATTGCCGGTTAGACCTGCTTCAAAGGCAGAGCAAATGAGAGAATGCTTGCGATCTTTAAAGTCCAATCACAAGGAGGATGATGCCAAAGTGAAGAGAGCGTTTCAAACCCTTCTAACTTATGTGGGAAACGTGGCAAAAAATCCTGATGAAGAGAAGTTCAGAAAAATTAGACTTAGCAACCAAACTTTCCAGGATAGAGTGGGTGCACTGAGAGGGGGAATTGAGTTTCTAGAGCTGTGTGGGTTTGAGAAAATTGAAGGTGGTGAGTTCTTGTTTCTGCCCAGGGACAAGGTTGACAGAGCAGTGCTCAATTCAGCTGGCTCTGAGCTGGATTCTGCAATAAAGAATCCCTTCTTTGGTGTTCTATAA 1236 46.28 MAGLSLKCGDCGALLRSVEEAQEHAELTSHSNFSESTEAVLNLVCAACGKPCRSKTESDLHTKRTGHTEFTDKTLEAAKPISLEAPKVAAESEDGGDASASKSEEMVVPEVNKNILEELEAMGFPTARATRALYYSGNVSLEAAVNWVVEHENDPEIDQMPLVPKDTKVEAPKPSLTSEQLKAKQQELRERARKKKEEEEKIAEREREKERIRFGKELLEAKRIEEENERKRILALRKAEKEEEKRAREKIRQKLEEDKAERRRRLGLPPEDPSTAKPAAPVVEEKKISLPVRPASKAEQMRECLRSLKSNHKEDDAKVKRAFQTLLTYVGNVAKNPDEEKFRKIRLSNQTFQDRVGALRGGIEFLELCGFEKIEGGEFLFLPRDKVDRAVLNSAGSELDSAIKNPFFGVL 411
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37449685 37458061 - Lag0016411.1 Lac12g2039 590636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2039 411 SUPERFAMILY UBA-like 97 164 IPR009060 GO:0005515(InterPro)
Lac12g2039 411 Gene3D - 113 157 - -
Lac12g2039 411 PANTHER F13M7.16 PROTEIN 1 411 - -
Lac12g2039 411 ProSitePatterns Zinc finger C2H2 type domain signature. 8 30 IPR013087 -
Lac12g2039 411 MobiDBLite consensus disorder prediction 253 270 - -
Lac12g2039 411 Coils Coil 178 213 - -
Lac12g2039 411 SMART PGNneu 321 384 - -
Lac12g2039 411 MobiDBLite consensus disorder prediction 253 279 - -
Lac12g2039 411 Pfam PUB domain 318 389 IPR018997 -
Lac12g2039 411 MobiDBLite consensus disorder prediction 82 106 - -
Lac12g2039 411 CDD PUB_UBA_plant 305 411 - -
Lac12g2039 411 CDD UBA_PUB_plant 110 158 - -
Lac12g2039 411 Gene3D - 303 401 - -
Lac12g2039 411 SUPERFAMILY PUG domain-like 297 407 IPR036339 -
Lac12g2039 411 MobiDBLite consensus disorder prediction 183 207 - -
Lac12g2039 411 Coils Coil 224 261 - -
Lac12g2039 411 Pfam UBA-like domain 112 159 IPR015940 -
Lac12g2039 411 ProSitePatterns Zinc finger C2H2 type domain signature. 45 67 IPR013087 -
Lac12g2039 411 SMART uba_6 112 150 IPR015940 -
Lac12g2039 411 MobiDBLite consensus disorder prediction 168 207 - -
Lac12g2039 411 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 110 151 IPR015940 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2039 Lac-Chr12:37449685 Lac6g2388 Lac-Chr6:41569942 2.00E-63 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2039 K24348 - csv:101215434 694.501