Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Lac12g2040 | ATGGGTAAGGAAAAGATTCACATCAACATCGTGGTTATTGGCCATGTCGACTCTGGAAAGTCGACCACCACTGGTCACCTTATCTACAAGCTTGGAGGAATTGACAAGCGTGTGATCGAGAGATTCGAGAAGGAAGCTGCTGAGATGAACAAGAGGTCATTCAAGTATGCTTGGGTGCTCGACAAACTTAAGGCAGAGCGTGAACGTGGTATTACCATTGACATTGCTCTCTGGAAGTTTGAGACCACCAAGTACTACTGCACAGTCATTGATGCTCCCGGACATCGTGACTTTATCAAGAACATGATTACTGGAACCTCACAGGCTGACTGTGCCGTACTCATTATTGACTCCACCACTGGTGGTTTCGAAGCTGGTATTTCTAAGGATGGTCAGACCCGTGAGCACGCTCTCCTTGCTTTCACCCTTGGTGTTAAGCAAATGATCTGCTGCTGCAACAAGATGGATGCCACCACTCCCAAATACTCCAAGGCAAGGTATGATGAAATCGTCAAGGAAGTCTCATCTTACCTCAAGAAGGTCGGATACAACCCAGAAAAAATCCCCTTCGTTCCCATCTCTGGTTTTGAGGGTGACAACATGATTGAGAGGTCCACCAACCTCGACTGGTACAAGGGACCAACCCTCCTTGAGGCTCTTGACTTGATTTCTGAGCCCAAGAGGCCCTCAGACAAGCCCCTCCGTCTCCCACTTCAGGACGTTTACAAGATCGGTGGTATTGGAACTGTCCCTGTCGGTCGTGTTGAAACTGGTGTCCTCAAGCCTGGTATGGTTGTCACCTTCGGGCCAACTGGACTGACCACTGAAGTTAAGTCCGTTGAAATGCATCACGAGTCTCTCCCAGAGGCCTTACCTGGTGACAACGTTGGCTTCAACGTGAAGAACGTTGCTGTCAAGGATCTCAAGCGTGGTTTCGTCGCCTCCAACTCCAAGGATGACCCGGCCAAGGAGGCTGCCAACTTCACATCCCAGGTTATCATCATGAACCACCCTGGCCAGATCGGTAATGGTTATGCCCCAGTCCTTGATTGCCACACCTCCCACATTGCCGTTAAGTTTGCCGAGATCCTCACCAAGATTGATCGTCGATCTGGTAAGGAACTTGAGAAGGAGCCCAAGTTCTTGAAGAATGGTGATGCTGGTATGGTTAAGATGATTCCCACCAAGCCTATGGTTGTGGAGACTTTCTCCTCGTACCCACCATTGGGTCGTTTCGCCGTTCGTGACATGCGTCAAACCGTTGCTGTTGGTGTGATCAAGAGTGTGGAGAAGAAGGACCCAACTGGAGCCAAGGTGACCAAGTCCGCTGTCAAGAAGAAATAA | 1344 | 49.7 | MGKEKIHINIVVIGHVDSGKSTTTGHLIYKLGGIDKRVIERFEKEAAEMNKRSFKYAWVLDKLKAERERGITIDIALWKFETTKYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISKDGQTREHALLAFTLGVKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKVGYNPEKIPFVPISGFEGDNMIERSTNLDWYKGPTLLEALDLISEPKRPSDKPLRLPLQDVYKIGGIGTVPVGRVETGVLKPGMVVTFGPTGLTTEVKSVEMHHESLPEALPGDNVGFNVKNVAVKDLKRGFVASNSKDDPAKEAANFTSQVIIMNHPGQIGNGYAPVLDCHTSHIAVKFAEILTKIDRRSGKELEKEPKFLKNGDAGMVKMIPTKPMVVETFSSYPPLGRFAVRDMRQTVAVGVIKSVEKKDPTGAKVTKSAVKKK | 447 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 12 | 37471269 | 37473100 | + | Lag0016412.1 | Lac12g2040 | 590637 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Lac12g2040 | 447 | Hamap | Elongation factor Tu [tuf]. | 2 | 432 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
| Lac12g2040 | 447 | FunFam | Elongation factor 1-alpha | 229 | 316 | - | - | |
| Lac12g2040 | 447 | ProSiteProfiles | Translational (tr)-type guanine nucleotide-binding (G) domain profile. | 5 | 230 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac12g2040 | 447 | CDD | EF1_alpha | 9 | 227 | - | - | |
| Lac12g2040 | 447 | Pfam | Elongation factor Tu GTP binding domain | 6 | 221 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac12g2040 | 447 | Gene3D | - | 1 | 228 | IPR027417 | - | |
| Lac12g2040 | 447 | PANTHER | TRANSLATION FACTOR | 4 | 427 | IPR050100 | GO:0003746(PANTHER)|GO:0003924(PANTHER)|GO:0006412(PANTHER)|GO:0006414(PANTHER) | |
| Lac12g2040 | 447 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 3 | 249 | IPR027417 | - | |
| Lac12g2040 | 447 | Pfam | Elongation factor Tu domain 2 | 248 | 313 | IPR004161 | GO:0005525(InterPro) | |
| Lac12g2040 | 447 | PRINTS | GTP-binding elongation factor signature | 68 | 76 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac12g2040 | 447 | PRINTS | GTP-binding elongation factor signature | 148 | 157 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac12g2040 | 447 | PRINTS | GTP-binding elongation factor signature | 88 | 98 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac12g2040 | 447 | PRINTS | GTP-binding elongation factor signature | 104 | 115 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac12g2040 | 447 | PRINTS | GTP-binding elongation factor signature | 9 | 22 | IPR000795 | GO:0003924(InterPro)|GO:0005525(InterPro) | |
| Lac12g2040 | 447 | SUPERFAMILY | EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain | 326 | 429 | IPR009001 | - | |
| Lac12g2040 | 447 | NCBIfam | translation elongation factor EF-1 subunit alpha | 1 | 433 | IPR004539 | GO:0003746(InterPro)|GO:0005525(InterPro)|GO:0006414(InterPro) | |
| Lac12g2040 | 447 | CDD | EF1_alpha_II | 230 | 320 | - | - | |
| Lac12g2040 | 447 | CDD | EF1_alpha_III | 323 | 426 | - | - | |
| Lac12g2040 | 447 | Gene3D | Translation factors | 323 | 430 | - | - | |
| Lac12g2040 | 447 | FunFam | Elongation factor 1-alpha | 1 | 226 | - | - | |
| Lac12g2040 | 447 | SUPERFAMILY | Translation proteins | 231 | 321 | IPR009000 | - | |
| Lac12g2040 | 447 | ProSitePatterns | Translational (tr)-type guanine nucleotide-binding (G) domain signature. | 61 | 76 | IPR031157 | - | |
| Lac12g2040 | 447 | FunFam | Elongation factor 1-alpha | 323 | 430 | - | - | |
| Lac12g2040 | 447 | Pfam | GTP-eEF1A C-terminal domain-like | 327 | 427 | IPR054696 | - | |
| Lac12g2040 | 447 | Gene3D | Translation factors | 229 | 316 | - | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Lac12g2040 | Lac-Chr12:37471269 | Lac8g2435 | Lac-Chr8:42411267 | 1.10E-253 | dispersed | |
| Lac12g2040 | Lac-Chr12:37471269 | Lac9g2564 | Lac-Chr9:44257201 | 1.10E-256 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Lac12g2040 | K03231 | - | csv:101215193 | 892.493 |