Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2048 ATGGTAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGCAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCGTACCCACCACCACAAACAACATATGAGGATATTGTAGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAACTCCATTCTCTCATGGCAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCGGTTTTCAACTTTCCTTCGACGGCCACCAACGCATCTTTTGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATGATTTCTGATTCCTCTCCATGCCCAAGTGCTGCGACAATTCCTGTACAGGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAAGCAGCGTCCCAGCAGCCCCGGACTGCTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTTGTCATCGCCAGCAGGAGGGTTTCCAGTGATCGGGGTCATTGATGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACAGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGAGCAACCTGCTCAGCAACAAGTATTGCAGCCTGGTGGTATTTTTGCCAAAGATGGTGCTACCTCCACCACACCAAATGCTCATCGTCGTCGCCGTCGGAAGAAATCTGAGATAAAACGGAGGGATCCCGCTCATCCAAAGCCAAATAGAAGTGGCTACAACTTCTTCTTTAAAGAACAGCATGCTAGACTCAAACCATTATACCCGGGGAAGGACAGAGAGATAAGTAGAATGATTGGTGAACTTTGGAATAAGGTTAAAGAGCCAGAAAGAACAGTATATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACGGGTCAGATCATCAGCGATGCAGTGCCATTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAAAATGACGAAACTGAGGGTGGCGACTCTCCTCAAAGCCCGGATAATGATACAAGCTACGTCGAAGGTGACTCTGGAGAGTATAAAACTGAAGAGAAGGAGGAAGAGGAAGAGGAAGGGGAAGAGGAGGAGGATTCGGAAGAAGATGCATCTCCACACGGAGTTGGCAATGTGGACGTTAACATTTTGGTTCAGGAGGAACACTGCGAGACGAGGACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTCGGCGACAATAAAGAAGTTTTTGCCGGGGATTCGGTAATGGTGGAGGCGAAGGAAGAACCAGAACCAGAACCAACAACAGCCATTAGAGAAGGTTAA 1506 47.01 MVEEERTEAGWGSRKELTMASTSFAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSLMATKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPMISDSSPCPSAATIPVQGMASMLPPSDNQAASQQPRTAATELPAVAPSLSSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQQVLQPGGIFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFKEQHARLKPLYPGKDREISRMIGELWNKVKEPERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNDETEGGDSPQSPDNDTSYVEGDSGEYKTEEKEEEEEEGEEEEDSEEDASPHGVGNVDVNILVQEEHCETRTAEEDVRKESSTVGDNKEVFAGDSVMVEAKEEPEPEPTTAIREG 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37560497 37563442 - Lag0016420.1 Lac12g2048 590645
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2048 501 CDD HMG-box_AtHMGB9-like 288 354 - -
Lac12g2048 501 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677(InterPro)
Lac12g2048 501 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 288 355 IPR009071 -
Lac12g2048 501 SUPERFAMILY ARID-like 49 156 IPR036431 GO:0003677(InterPro)
Lac12g2048 501 MobiDBLite consensus disorder prediction 268 282 - -
Lac12g2048 501 MobiDBLite consensus disorder prediction 384 501 - -
Lac12g2048 501 MobiDBLite consensus disorder prediction 481 501 - -
Lac12g2048 501 MobiDBLite consensus disorder prediction 257 298 - -
Lac12g2048 501 SMART bright_3 54 145 IPR001606 GO:0003677(InterPro)
Lac12g2048 501 MobiDBLite consensus disorder prediction 414 434 - -
Lac12g2048 501 FunFam High mobility group B protein 15 270 365 - -
Lac12g2048 501 SUPERFAMILY HMG-box 281 360 IPR036910 -
Lac12g2048 501 Coils Coil 337 357 - -
Lac12g2048 501 FunFam High mobility group B protein 15 47 159 - -
Lac12g2048 501 SMART hmgende2 287 356 IPR009071 -
Lac12g2048 501 Gene3D High mobility group box domain 271 365 IPR036910 -
Lac12g2048 501 Pfam HMG (high mobility group) box 288 355 IPR009071 -
Lac12g2048 501 MobiDBLite consensus disorder prediction 450 471 - -
Lac12g2048 501 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 28 404 - -
Lac12g2048 501 Coils Coil 415 435 - -
Lac12g2048 501 SMART ARID_2 50 140 - -
Lac12g2048 501 Pfam ARID/BRIGHT DNA binding domain 56 140 IPR001606 GO:0003677(InterPro)
Lac12g2048 501 Gene3D - 46 148 IPR036431 GO:0003677(InterPro)
Lac12g2048 501 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2048 Lac-Chr12:37560497 Lac2g0113 Lac-Chr2:871713 8.60E-69 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23088 PF01388 ARID 8.70E-17 CL0123 Lac TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2048 - - - 0.0