Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g2048 | ATGGTAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGCAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCGTACCCACCACCACAAACAACATATGAGGATATTGTAGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAACTCCATTCTCTCATGGCAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCGGTTTTCAACTTTCCTTCGACGGCCACCAACGCATCTTTTGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATGATTTCTGATTCCTCTCCATGCCCAAGTGCTGCGACAATTCCTGTACAGGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAAGCAGCGTCCCAGCAGCCCCGGACTGCTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTTGTCATCGCCAGCAGGAGGGTTTCCAGTGATCGGGGTCATTGATGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACAGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGAGCAACCTGCTCAGCAACAAGTATTGCAGCCTGGTGGTATTTTTGCCAAAGATGGTGCTACCTCCACCACACCAAATGCTCATCGTCGTCGCCGTCGGAAGAAATCTGAGATAAAACGGAGGGATCCCGCTCATCCAAAGCCAAATAGAAGTGGCTACAACTTCTTCTTTAAAGAACAGCATGCTAGACTCAAACCATTATACCCGGGGAAGGACAGAGAGATAAGTAGAATGATTGGTGAACTTTGGAATAAGGTTAAAGAGCCAGAAAGAACAGTATATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACGGGTCAGATCATCAGCGATGCAGTGCCATTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAAAATGACGAAACTGAGGGTGGCGACTCTCCTCAAAGCCCGGATAATGATACAAGCTACGTCGAAGGTGACTCTGGAGAGTATAAAACTGAAGAGAAGGAGGAAGAGGAAGAGGAAGGGGAAGAGGAGGAGGATTCGGAAGAAGATGCATCTCCACACGGAGTTGGCAATGTGGACGTTAACATTTTGGTTCAGGAGGAACACTGCGAGACGAGGACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTCGGCGACAATAAAGAAGTTTTTGCCGGGGATTCGGTAATGGTGGAGGCGAAGGAAGAACCAGAACCAGAACCAACAACAGCCATTAGAGAAGGTTAA | 1506 | 47.01 | MVEEERTEAGWGSRKELTMASTSFAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSLMATKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPMISDSSPCPSAATIPVQGMASMLPPSDNQAASQQPRTAATELPAVAPSLSSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQQVLQPGGIFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFKEQHARLKPLYPGKDREISRMIGELWNKVKEPERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNDETEGGDSPQSPDNDTSYVEGDSGEYKTEEKEEEEEEGEEEEDSEEDASPHGVGNVDVNILVQEEHCETRTAEEDVRKESSTVGDNKEVFAGDSVMVEAKEEPEPEPTTAIREG | 501 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 37560497 | 37563442 | - | Lag0016420.1 | Lac12g2048 | 590645 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g2048 | 501 | CDD | HMG-box_AtHMGB9-like | 288 | 354 | - | - | |
Lac12g2048 | 501 | CDD | ARID_HMGB9-like | 55 | 140 | IPR045303 | GO:0003677(InterPro) | |
Lac12g2048 | 501 | ProSiteProfiles | HMG boxes A and B DNA-binding domains profile. | 288 | 355 | IPR009071 | - | |
Lac12g2048 | 501 | SUPERFAMILY | ARID-like | 49 | 156 | IPR036431 | GO:0003677(InterPro) | |
Lac12g2048 | 501 | MobiDBLite | consensus disorder prediction | 268 | 282 | - | - | |
Lac12g2048 | 501 | MobiDBLite | consensus disorder prediction | 384 | 501 | - | - | |
Lac12g2048 | 501 | MobiDBLite | consensus disorder prediction | 481 | 501 | - | - | |
Lac12g2048 | 501 | MobiDBLite | consensus disorder prediction | 257 | 298 | - | - | |
Lac12g2048 | 501 | SMART | bright_3 | 54 | 145 | IPR001606 | GO:0003677(InterPro) | |
Lac12g2048 | 501 | MobiDBLite | consensus disorder prediction | 414 | 434 | - | - | |
Lac12g2048 | 501 | FunFam | High mobility group B protein 15 | 270 | 365 | - | - | |
Lac12g2048 | 501 | SUPERFAMILY | HMG-box | 281 | 360 | IPR036910 | - | |
Lac12g2048 | 501 | Coils | Coil | 337 | 357 | - | - | |
Lac12g2048 | 501 | FunFam | High mobility group B protein 15 | 47 | 159 | - | - | |
Lac12g2048 | 501 | SMART | hmgende2 | 287 | 356 | IPR009071 | - | |
Lac12g2048 | 501 | Gene3D | High mobility group box domain | 271 | 365 | IPR036910 | - | |
Lac12g2048 | 501 | Pfam | HMG (high mobility group) box | 288 | 355 | IPR009071 | - | |
Lac12g2048 | 501 | MobiDBLite | consensus disorder prediction | 450 | 471 | - | - | |
Lac12g2048 | 501 | PANTHER | HIGH MOBILITY GROUP B PROTEIN 9 | 28 | 404 | - | - | |
Lac12g2048 | 501 | Coils | Coil | 415 | 435 | - | - | |
Lac12g2048 | 501 | SMART | ARID_2 | 50 | 140 | - | - | |
Lac12g2048 | 501 | Pfam | ARID/BRIGHT DNA binding domain | 56 | 140 | IPR001606 | GO:0003677(InterPro) | |
Lac12g2048 | 501 | Gene3D | - | 46 | 148 | IPR036431 | GO:0003677(InterPro) | |
Lac12g2048 | 501 | ProSiteProfiles | ARID domain profile. | 53 | 144 | IPR001606 | GO:0003677(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac12g2048 | Lac-Chr12:37560497 | Lac2g0113 | Lac-Chr2:871713 | 8.60E-69 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
23088 | PF01388 | ARID | 8.70E-17 | CL0123 | Lac | TR |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g2048 | - | - | - | 0.0 |