Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2048 ATGGTAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGCAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGCTTCTTCTAACTGTGTTCCGTACCCACCACCACAAACAACATATGAGGATATTGTAGCCAATCCCAAGATCTTTATGGCATCCTTGGAAAAACTCCATTCTCTCATGGCAACCAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTCGTGGAGGTCACTTCTCGTGGTGGCATTGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCGGTTTTCAACTTTCCTTCGACGGCCACCAACGCATCTTTTGTGCTGAGGAAGTATTATCTTTCATTGCTTCATCATTTTGAACAGATTTACTTCTTTAAAGCTGTGGGATGGACACCAATGATTTCTGATTCCTCTCCATGCCCAAGTGCTGCGACAATTCCTGTACAGGGGATGGCCTCTATGTTGCCGCCATCAGATAATCAAGCAGCGTCCCAGCAGCCCCGGACTGCTGCAACCGAACTTCCAGCAGTTGCTCCGAGTTTGTCATCGCCAGCAGGAGGGTTTCCAGTGATCGGGGTCATTGATGGAAAATTTGATAGCGGATATCTCGTTACTGTTACTGTAGGAACAGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTTCGGAGCAACCTGCTCAGCAACAAGTATTGCAGCCTGGTGGTATTTTTGCCAAAGATGGTGCTACCTCCACCACACCAAATGCTCATCGTCGTCGCCGTCGGAAGAAATCTGAGATAAAACGGAGGGATCCCGCTCATCCAAAGCCAAATAGAAGTGGCTACAACTTCTTCTTTAAAGAACAGCATGCTAGACTCAAACCATTATACCCGGGGAAGGACAGAGAGATAAGTAGAATGATTGGTGAACTTTGGAATAAGGTTAAAGAGCCAGAAAGAACAGTATATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGAGGATTACAGAGAGAAGCTGAGGACGGGTCAGATCATCAGCGATGCAGTGCCATTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGCTGACAAAAATGACGAAACTGAGGGTGGCGACTCTCCTCAAAGCCCGGATAATGATACAAGCTACGTCGAAGGTGACTCTGGAGAGTATAAAACTGAAGAGAAGGAGGAAGAGGAAGAGGAAGGGGAAGAGGAGGAGGATTCGGAAGAAGATGCATCTCCACACGGAGTTGGCAATGTGGACGTTAACATTTTGGTTCAGGAGGAACACTGCGAGACGAGGACTGCCGAAGAGGATGTTAGAAAAGAGAGTAGCACGGTCGGCGACAATAAAGAAGTTTTTGCCGGGGATTCGGTAATGGTGGAGGCGAAGGAAGAACCAGAACCAGAACCAACAACAGCCATTAGAGAAGGTTAA 1506 47.01 MVEEERTEAGWGSRKELTMASTSFAGGKQLPVIEASSNCVPYPPPQTTYEDIVANPKIFMASLEKLHSLMATKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYLSLLHHFEQIYFFKAVGWTPMISDSSPCPSAATIPVQGMASMLPPSDNQAASQQPRTAATELPAVAPSLSSPAGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPSEQPAQQQVLQPGGIFAKDGATSTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFKEQHARLKPLYPGKDREISRMIGELWNKVKEPERTVYQEKAMKDKERYRIEMEDYREKLRTGQIISDAVPLQQRLPEPDLNMVYADKNDETEGGDSPQSPDNDTSYVEGDSGEYKTEEKEEEEEEGEEEEDSEEDASPHGVGNVDVNILVQEEHCETRTAEEDVRKESSTVGDNKEVFAGDSVMVEAKEEPEPEPTTAIREG 501
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37560497 37563442 - Lag0016420.1 Lac12g2048 590645

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2048 501 CDD HMG-box_AtHMGB9-like 288 354 - -
Lac12g2048 501 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677(InterPro)
Lac12g2048 501 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 288 355 IPR009071 -
Lac12g2048 501 SUPERFAMILY ARID-like 49 156 IPR036431 GO:0003677(InterPro)
Lac12g2048 501 MobiDBLite consensus disorder prediction 268 282 - -
Lac12g2048 501 MobiDBLite consensus disorder prediction 384 501 - -
Lac12g2048 501 MobiDBLite consensus disorder prediction 481 501 - -
Lac12g2048 501 MobiDBLite consensus disorder prediction 257 298 - -
Lac12g2048 501 SMART bright_3 54 145 IPR001606 GO:0003677(InterPro)
Lac12g2048 501 MobiDBLite consensus disorder prediction 414 434 - -
Lac12g2048 501 FunFam High mobility group B protein 15 270 365 - -
Lac12g2048 501 SUPERFAMILY HMG-box 281 360 IPR036910 -
Lac12g2048 501 Coils Coil 337 357 - -
Lac12g2048 501 FunFam High mobility group B protein 15 47 159 - -
Lac12g2048 501 SMART hmgende2 287 356 IPR009071 -
Lac12g2048 501 Gene3D High mobility group box domain 271 365 IPR036910 -
Lac12g2048 501 Pfam HMG (high mobility group) box 288 355 IPR009071 -
Lac12g2048 501 MobiDBLite consensus disorder prediction 450 471 - -
Lac12g2048 501 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 28 404 - -
Lac12g2048 501 Coils Coil 415 435 - -
Lac12g2048 501 SMART ARID_2 50 140 - -
Lac12g2048 501 Pfam ARID/BRIGHT DNA binding domain 56 140 IPR001606 GO:0003677(InterPro)
Lac12g2048 501 Gene3D - 46 148 IPR036431 GO:0003677(InterPro)
Lac12g2048 501 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2048 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2048 Lac-Chr12:37560497 Lac2g0113 Lac-Chr2:871713 8.60E-69 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Lac12g2048 . 19 385 ARID Transcription Factor Family AT1G04880 57.0 7.1e-107 385.2
Lac5g0024 . 209 479 ARID Transcription Factor Family AT1G20910 60.3 4.1e-90 329.3
Lac2g0048 . 141 384 ARID Transcription Factor Family AT1G20910 56.6 3.9e-77 286.2
Lac2g0113 . 16 350 ARID Transcription Factor Family AT1G76110 59.2 1.3e-105 380.6
Lac5g0024 . 188 509 ARID Transcription Factor Family AT1G76510 59.6 3.3e-109 392.9
Lac2g0048 . 126 414 ARID Transcription Factor Family AT1G76510 60.5 8.2e-100 361.7
Lac12g2513 . 2 772 ARID Transcription Factor Family AT3G43240 59.2 2.4e-264 909.1
Lac4g3061 . 5 776 ARID Transcription Factor Family AT3G43240 57.7 1.4e-261 899.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
23088 PF01388 ARID 8.70E-17 CL0123 Lac TR