Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2057 ATGGGTAGCGACGGAAAGGTCTTCACATTGGCTGAAGTCTCTCAGCACAACAACCGTAAGGACTGTTGGTTGATCATCAATGCCAAGGTTTATAATGTAACCGAGTTCTTGGAAGACCATCCCGGTGGCGACGAGGTTTTGTTGTCAGGCACAGGTAAGGATGCAACTGATGATTTTGAAGATGTTGGTCATAGCGAGAGCGCAAGAGAAATGATGAACAAATACTACGTTGGAGAGATCGACACCTTGACGATCCCAGAAAGGTCGACATACACAGCTCCAAAGCAGCCTCACTACAATCAGGATAAGACGACGGAGTTCATCGTCAAGCTCCTCCAGTTCCTGGTTCCTCTCGCAATCTTGGGTATAGCAGTCGGTATCCGCTTTTACAGCAAATCAACCTGA 405 47.41 MGSDGKVFTLAEVSQHNNRKDCWLIINAKVYNVTEFLEDHPGGDEVLLSGTGKDATDDFEDVGHSESAREMMNKYYVGEIDTLTIPERSTYTAPKQPHYNQDKTTEFIVKLLQFLVPLAILGIAVGIRFYSKST 134
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37681232 37684547 + Lag0016429.1 Lac12g2057 590654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2057 134 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Lac12g2057 134 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Lac12g2057 134 Pfam Cytochrome b5-like Heme/Steroid binding domain 9 80 IPR001199 -
Lac12g2057 134 SUPERFAMILY Cytochrome b5-like heme/steroid binding domain 6 86 IPR036400 -
Lac12g2057 134 PANTHER CYTOCHROME B5 5 126 IPR050668 GO:0005783(PANTHER)|GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Lac12g2057 134 FunFam Cytochrome b5 type B 2 84 - -
Lac12g2057 134 Gene3D - 2 83 IPR036400 -
Lac12g2057 134 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Lac12g2057 134 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Lac12g2057 134 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Lac12g2057 134 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Lac12g2057 134 SMART Cyt_b5_2 8 81 IPR001199 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2057 Lac-Chr12:37681232 Lac4g0070 Lac-Chr4:1259308 1.40E-47 dispersed
Lac11g2510 Lac-Chr11:41219714 Lac12g2057 Lac-Chr12:37681232 3.40E-43 wgd
Lac12g2057 Lac-Chr12:37681232 Lac7g0465 Lac-Chr7:3688907 6.30E-59 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2057 K23490 - csv:101213506 249.21