Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2067 ATGCATTCTCGCCGCATGCATTTCTGGCCGCATGAATTTCTTGCCGCATGCAACAATGATTTGATGGGCCTGTTACTTGACACTGGATTCTTCCATGCTGATCCTCATCCTGGGAATTTGATCCGCACTCCAGATGGAAAGTTGGCCATACTTGACTTCGGTTTAGTCACAAAGTTAACTGATGATCAGAAGTATGGAATGATTGAAGCAATCGCACATCTCATTCATCGAGATTATTCAGCTATAGTTAAAGACTTTGTTAAGCTTGGCTTTATCCCAGAGGGTGTTAATTTGGAACCGATCTTGCCAGTTCTAGCAAAGGTTTTCGATCAGGCTCTTGAAGGTGGAGGTGCAAAGAATATCAACTTCCAGGAGCTGGCTTCAGATTTAGCTCAGATAACATTTGATTATCCATTTCGGATACCTCCATATTTTGCTCTTATAATTAGGGCAATTGGGGTTCTAGAGGGAATAGCTTTAGTGGGAAACCCTGATTTTGCCATTGTCGATGAAGCATATCCTTATATTGCACAGAGACTTCTCACTGATGAGTCCCCAAGGTTAAGGAGTGCTTTACGATACACAATCTACGGGAAGTCTGGAGTATTCGATGCTGAGAGATTCATTGATGTTATGCAAGCCTTCGAGAATTTTATAACTGCTGCTAAAAGTGGAGGTGGAGAGGATCTAAATGGAGATATGGCCGAGCTTGGTGGTCTGAAAAACCAAACAGCATCTACCTTTCCTCAATTTCTTCCCGCTCCTCGCGAATTCCAGCAAAAGCAACCAATCGAAACTAGGGCATCCTTGGCCTTCCTGCTGTCTGATAGAGGGAACTTCTTTCGAGAATTTCTTCTCGACGAGATTGTGAAGGGCATTGATGCAGTCACAAGGGAGCAGTTAGTACGTTTAATGTCAATCTTTGGAATCAGAAATGCTACACCAGTTTTCAATATGGTTCCTTCGATTGGACCGTTCAAGCCTGTCGCACTTCTACCCACAATAACAGAAGAAGACAGGGTCATACTAAATAACGTTCAAAAGATTCTCGAGTTCTTAACGGCAGGAAGTTCAATCTCAACAGCATCTAATGAGGGTGTGGACGTTGTTCGAGTTATTCAAGAGCTTCTTCCAGTTTTGCCAGGCATCTCTGCTACAGTTCTTCCCGAGGTGCTCAGTCGATTATCTTCCCGGGTTTTTTCTTACTCGAGAGAGATGGAAACTAGGCATATCACAGGCCTCCAAGTTTGGTCATGGTTTCAACCGATCCAACCGGTGAAGACAGGCGTTTCCTTGTTGATTGCACTCCTGGCGGCGTCGGCGGCGGCGGCGCGGAGCAGGTGCACCGCCGTAGTGTGCTCTTGCTATGCACCTTCAGGAAGCTTTGGCAGCAAAGGAGAAGGAAGCAAGACGAGCACCGTTTTCAGATCACGTTCTGTTGAAGAAAAGAGAGATGGGGTCAAGCAAAAATGGCAGAATCATCAACTACAAGATGGAAATGGAAAAGGGTCTAATGGGATTCATTTAGAATTCCCAAATCTTAAGAGCAATTTAAAGAAGAAGACAAAGGAGAATTGTTCTACAGAAACAAGGAAAGTGAACTGGCCTGATGCTCATGGCAAAGATATTGCTCACATCCAAGAGTTTGAACCAAGTGTTTCAGGAGATGGGGAGCTTGAGGGAGTGAGGAACTCTTGTGTCTGCACAATTCAGTAA 1716 44.52 MHSRRMHFWPHEFLAACNNDLMGLLLDTGFFHADPHPGNLIRTPDGKLAILDFGLVTKLTDDQKYGMIEAIAHLIHRDYSAIVKDFVKLGFIPEGVNLEPILPVLAKVFDQALEGGGAKNINFQELASDLAQITFDYPFRIPPYFALIIRAIGVLEGIALVGNPDFAIVDEAYPYIAQRLLTDESPRLRSALRYTIYGKSGVFDAERFIDVMQAFENFITAAKSGGGEDLNGDMAELGGLKNQTASTFPQFLPAPREFQQKQPIETRASLAFLLSDRGNFFREFLLDEIVKGIDAVTREQLVRLMSIFGIRNATPVFNMVPSIGPFKPVALLPTITEEDRVILNNVQKILEFLTAGSSISTASNEGVDVVRVIQELLPVLPGISATVLPEVLSRLSSRVFSYSREMETRHITGLQVWSWFQPIQPVKTGVSLLIALLAASAAAARSRCTAVVCSCYAPSGSFGSKGEGSKTSTVFRSRSVEEKRDGVKQKWQNHQLQDGNGKGSNGIHLEFPNLKSNLKKKTKENCSTETRKVNWPDAHGKDIAHIQEFEPSVSGDGELEGVRNSCVCTIQ 571
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37807067 37812134 + Lag0016439.1 Lac12g2067 590664

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2067 571 SUPERFAMILY Protein kinase-like (PK-like) 6 82 IPR011009 -
Lac12g2067 571 PANTHER CHAPERONE-ACTIVITY OF BC1 COMPLEX CABC1 -RELATED 25 404 IPR050154 GO:0009507(PANTHER)
Lac12g2067 571 Pfam ABC1 atypical kinase-like domain 25 84 IPR004147 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2067 K08869 - - csv:101212546 693.345
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2067 Lac-Chr12:37807067 Lac3g3101 Lac-Chr3:49667680 3.50E-42 dispersed
Lac12g2067 Lac-Chr12:37807067 Lac2g2173 Lac-Chr2:27527090 5.40E-27 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g879 . Blo12g00123 Bda03g01118 . Bpe04g01062 . . . Cmo08g01004 . . . . . . . . . . . . . . . Cla06g00742 Cam06g0795 Cec06g0800 . Clacu06g0794 Cmu06g0767 Cre06g1548 . . . . . . Chy05g00545 . . . . . . . . . Sed09g0191 . . Cma08g01034 . . . . Cpe17g00245 Bhi12g01511 Tan06g2320 Cmetu05g0760 Lac12g2067 Hepe03g0344 . Lcy13g0450 . . . . . . . Lsi09g01157 . . Cme05g00693
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009075 1 1 2 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 4 1 1 34