Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2078 ATGGCGGCACTTAGTAAATGGCCTTCCTTGTCTCTGTTTGCCTTCGCAGTGGTGTTCTTCCTAACAATCGCTCTGGTTCGCAGAGAAGAAACCTCCGGAATTAGGACTGTGTTGGCTACAGAGTTTCAGAGCTCTAGCAACTCATCAATGGCGACTAGGTTGGTGAATGATGATTTGGAGGAACTTAACAATCAGCATGCTGTGGATAATCCTGACGAGGTTGCTGCCTCTGTTGAGATGATCATCCGTAACAGCACTGAAAGGAGGAAGTTGGGATTCTTCTCCTGTGGAACTGGCAATCCCATTGATGACTGCTGGCGTTGCGACTCCAATTGGCACCGTAACCGTAAACGCCTTGCCGAATGCGGCATTGGGTTTGGTCGGAATGCTATTGGTGGTCGTGATGGTCGTTTCTATGTCGTCACAGATTCGAGCGACAATGATCCGGTGAACCCGAAGCCAGGGACTCTTCGTCATGCTGTGATTCAAGAGAAACCTCTCTGGATTGTGTTCAAAAGGGACATGGTGATTCGGTTGAAACAGGAACTCATCATGAACAGTTTTAAGACCATTGATGCTCGAGGGGTGAATGTACACATTGCCAATGGCGCTTGCATCACAATCCAGTTTGTGACTAACATCATTATCCATGGTCTTCACATCCATGATTGCAAGCCCACAGGGAATGCCATGGTGAGAAGCTCTCCAACTCATTTTGGATGGAGGACTATGGCTGATGGAGATGCCATTTCCATCTTTGGGTCAAGCCACATATGGATTGACCACAATTCACTCTCTAATTGTGCTGATGGCCTTGTTGATGCTGTCATGGGCTCAACTGCAATCACTATCTCCAACAATCACTTCACTCACCACAATGAGGTGATGCTTCTAGGCCATAGTGATTCCTACACAAAGGACAAGCAAATGCAAGTCACCATTGCTTACAACCATTTTGGAGAGGGACTCATTCAAAGAATGCCAAGATGTAGGCATGGCTATTTCCATGTGGTGAACAATGACTACACTCACTGGGAGATGTATGCCATTGGTGGGAGTGCAAACCCCACCATCAATAGTCAAGGCAACAGATATGCTGCTCCAACCAACCCTTTTGCCAAAGAGGTGACGAAGCGAGTCGAGACTCCGGAGAGTGAATGGAAGGGCTGGAATTGGAGATCAGAAGGAGATATGCTACTGAATGGAGCTTATTTCACCCCATCAGGCGCTGGAGCTTCAGCAAGCTATGCCAGAGCCTCCAGCTTAGGAGCCAAATCTGCTTCCATGGTTGGCTCCATCACTTCTTCTGCAGGTTCGCTCCCTTGCCGCCGAGGCCATCCCTGCTAG 1347 48.4 MAALSKWPSLSLFAFAVVFFLTIALVRREETSGIRTVLATEFQSSSNSSMATRLVNDDLEELNNQHAVDNPDEVAASVEMIIRNSTERRKLGFFSCGTGNPIDDCWRCDSNWHRNRKRLAECGIGFGRNAIGGRDGRFYVVTDSSDNDPVNPKPGTLRHAVIQEKPLWIVFKRDMVIRLKQELIMNSFKTIDARGVNVHIANGACITIQFVTNIIIHGLHIHDCKPTGNAMVRSSPTHFGWRTMADGDAISIFGSSHIWIDHNSLSNCADGLVDAVMGSTAITISNNHFTHHNEVMLLGHSDSYTKDKQMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRYAAPTNPFAKEVTKRVETPESEWKGWNWRSEGDMLLNGAYFTPSGAGASASYARASSLGAKSASMVGSITSSAGSLPCRRGHPC 448
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 37893849 37896983 + Lag0016450.1 Lac12g2078 590675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 122 139 IPR018082 -
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 348 367 IPR018082 -
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 146 171 IPR018082 -
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 390 414 IPR018082 -
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 419 442 IPR018082 -
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 182 198 IPR018082 -
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 326 345 IPR018082 -
Lac12g2078 448 PRINTS Pollen allergen Amb family signature 246 267 IPR018082 -
Lac12g2078 448 SMART amb_all 174 371 IPR002022 -
Lac12g2078 448 Pfam Pectate lyase 187 363 IPR002022 -
Lac12g2078 448 PANTHER PECTATE LYASE 18-RELATED 20 445 IPR045032 GO:0030570(InterPro)
Lac12g2078 448 SUPERFAMILY Pectin lyase-like 76 442 IPR011050 -
Lac12g2078 448 Gene3D - 99 441 IPR012334 -
Lac12g2078 448 FunFam Pectate lyase 99 441 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2078 Lac-Chr12:37893849 Lac8g2540 Lac-Chr8:43165558 1.40E-171 dispersed
Lac6g0705 Lac-Chr6:5993368 Lac12g2078 Lac-Chr12:37893849 3.20E-172 transposed
Lac11g2537 Lac-Chr11:41447143 Lac12g2078 Lac-Chr12:37893849 1.30E-201 wgd
Lac12g2078 Lac-Chr12:37893849 Lac7g0490 Lac-Chr7:3919748 2.10E-212 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2078 K01728 - csv:101217580 870.537