Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2093 ATGGTTCTTAAAATGCTGTTTTGTTTGCTGCTGCTGGCTTTTCTGTTTAATACTTCACATGGGTTGAATCCAGAAGGATATTTTCTCTTGGAGCTGAAAGATGGTCTGTCTGATCCATTTGGTTCATTGAGAAACTGGGATTCGAGTGACGAAACACCATGTGGATGGACTGGTGTAGACTGCACTTCTGGTGAGGAACCAGTCGTCTATTCTCTTGACTTGAGCTTGAAGAATCTTTCGGGTCCTTTAAGGTCGAGCATCGGTAATTTAGTCCACCTCTCTTATCTCAATCTTTCCTTCAATGGATTCACTGGAAGTATACCGAAAGAGATCAGTAATTGTATGGGGTTGGAGTATCTTGTACTGAACAACAATAAGTTTGATGGGAAACTTCCATCTGAATTGGGAAAGCTGACATCTTTGGTTATGTTGAATATATGTAATAATGGAATTCATGGTTCTTTTCCTGAGGAAATTGGAAATTTGAAATCCTTGGTTGAATTAGTTGCATATACCAACAATATCACCGGTTCGTTGCCTCGATCTTTTGGAAACCTCGAGAGCTTGAGAAGGTTTAGAGCAGGACAGAATGCGATTTCGGGAAGGCTACCAGCTGAAATAGGTCAGTGTGAGAACTTGGAAACACTTGGCCTTGCCCAAAATCAGTTAGAAGGGGAATTACCAAAGGAGCTTGGCATGCTTAGAAACTTGACTGAATTGATTCTTTGGGAGAACCAGTTTTCTGGGATTCTACCAAAAGAGCTTGGAAACTGTACAAGTCTAACTATTCTTGCTCTGTATGAGAACAATCTTGGTGGACCCATACCCAAGGAGTTTGGGAACCTAATCTCTTTGAAGAAGTTGTATATATACCGAAACGCATTGAATGGAACCATTCCGAGCGAGCTTGGGAACCTTTCTCTGGCAATAGAGATAGACTTCTCGGAGAACTATTTGACTGGTGAGATACCTAAAGAGTTTAGCAACATAAACGGTCTACAATTACTGTATCTCTTTCAAAACCAGCTGACTGGTGTTATACCAAATGAACTTAGTAGCCTGAGTAACTTGACTAAACTTGATCTTTCAATCAACAACCTCACAGGCCCTGTACCATTCGGGTTTCAGTATATGCCTTCATTGATTCAATTGCAGCTTTTTGAAAACAGTTTGAGTGGCAGCATTCCCCAAGGACTTGGACGTTATAGCGCCCTATGGGTGGTCGACTTTTCAGACAATCTCTTGACAGGACGGATACCTCCCCATCTATGTCGTCATTCTAACTTGATCATCTTGAACTTGGAGTCAAATAACCTTTATGGAAATATACCTACTGGGATCTTGAACTGCAGACCATTGTTGCAAATTCGTCTGGTCGGAAACAGGTTAACTGGCGGCTTTCCATCAGAGTTGTGTAACTTGGTGAACCTTACTGCCATTGACTTGGATCAGAACAGATTTAGTGGTCCGCTTCCTCCAGAAATCAGAAATTGCCAAAAGTTGCAAAGGCTGCATATTTCAAACAATTACTTTACATCTAATTTGCCGAAGGAGATAGGAAACCTCGTGCAGCTGGCGACTTTAAACGTTTCTTCAAATCTTTTTACTGGGCCAATTCCACCCGAAATAGTCAATTGCAAGACTCTCCAACGACTCGATCTTAGCCACAACAGCTTTGAAAATACTTTGCCAAAGGAGATTGGATCTCTTTTGCAGTTGGAAATTCTTAAGGTTTCAGAAAATAAATTTTCAGGAAATATACCTGGAGAATTGAGAAACCTCTCCCATTTAACAGAATTGCAAATGGGTGGGAATTCATTCTCTGGTAGCATTCCTATGGAGCTAGGGTCCCTAAAAAGCTTGCAGATTGCTCTGAACCTCAGCTTTAATATGCTAACTGGGACAATACCACAAGAACTAGGAAATCTGATTCTACTGGAATATCTCCTGCTTAATAACAATAATTTGACTGGTGAAATACCTAGCTCCTTTGCCAGTCTTTCCAGTTTAATGGGCTGCAACTTCTCATACAACGACCTCCGTGGTCCTATCCCTTCGATACCTTTGTTTCAGAACATGCCTACTAGTAGCTTCATTGGCAATAAGGGGCTCTGTGGTGGACCTCTTGGTGACTGCATTGGAGATTCATCTTCTCCATCTATTCCATCTTTCGAGAGCATAAATGCGCCTCGAGGTAGAATCATAACTGGGATTGCTGCTACTATAGGTGGAGTTTCTATTGTTCTAATTGTGATCATTTTATATTGCATGAGACATCCGCCCGATATAGTGCAAAACAAGGAAACACAATCTCTGGATTCCGACGTGTACTTCCCGCCCAAGGAAGGTTTTACTTTCCAAGATCTAATTGAAGCCACAAATAGTTTTCATGAGAGCTGTGTGGTGGGAAAAGGTGCTTGTGGAACTGTATACAAGGCAGTGATGCATTCTGGACAGACCGTTGCTGTCAAGAAGTTAGCGTCAAATAGGGAAGGGAGCAATATTGAGAATAGCTTTCGGGCTGAGATTTCGACGCTAGGAAAGATTAGACATCGGAATATCGTTAAACTATATGGATTTTGTTATCACCAGGGTTCGAATCTTCTTCTCTATGAGTACATGGAAAGGGGTAGTTTGGGTGAGTTGCTTCACGGGACCGCGTGTAACTTGGAATGGCCGACTCGGTTTACAATAGCCATTGGAGCTGCAGAGGGACTTGCTTATCTACACCATGGCTGCAAACCAAGAATCATACATCGTGATATCAAATCAAATAACATTCTCCTTGATTATAACTTTGAGGCACATGTTGGTGATTTCGGTTTGGCGAAAGTGATGGACATGCCTCAATCTAAATCAATGTCAGCAGTCGCTGGATCATACGGATACATCGCTCCAGAATATGCATACACCATGAAGGTCACAGAAAAATGTGACATATATAGCTATGGAGTAGTTTTACTAGAACTGCTAACTGGAAGAACTCCAGTACAACCAATCGATCAGGGAGGCGATCTCGTCACATGGGTCAGAAACTATATGCGAGACCATTCGATGTCGTCTGGAATGCTAGATCAGCGACTAAATCTTCAAGACCAAGCCATGGTCGATCACATGCTAACAGTCCTAAAAGTAGCTTTAATGTGCACAAGTTTGTCTCCTTTCCAACGACCATCGATGCGGGAAGTCGTATTGATGCTTTTAGAATCTACCGAGCCCGACGAAGATCATATTCCAGCTTTAACTTATAATCTAGCTCCGAAGGACGATGCAACCTCATGA 3282 42.02 MVLKMLFCLLLLAFLFNTSHGLNPEGYFLLELKDGLSDPFGSLRNWDSSDETPCGWTGVDCTSGEEPVVYSLDLSLKNLSGPLRSSIGNLVHLSYLNLSFNGFTGSIPKEISNCMGLEYLVLNNNKFDGKLPSELGKLTSLVMLNICNNGIHGSFPEEIGNLKSLVELVAYTNNITGSLPRSFGNLESLRRFRAGQNAISGRLPAEIGQCENLETLGLAQNQLEGELPKELGMLRNLTELILWENQFSGILPKELGNCTSLTILALYENNLGGPIPKEFGNLISLKKLYIYRNALNGTIPSELGNLSLAIEIDFSENYLTGEIPKEFSNINGLQLLYLFQNQLTGVIPNELSSLSNLTKLDLSINNLTGPVPFGFQYMPSLIQLQLFENSLSGSIPQGLGRYSALWVVDFSDNLLTGRIPPHLCRHSNLIILNLESNNLYGNIPTGILNCRPLLQIRLVGNRLTGGFPSELCNLVNLTAIDLDQNRFSGPLPPEIRNCQKLQRLHISNNYFTSNLPKEIGNLVQLATLNVSSNLFTGPIPPEIVNCKTLQRLDLSHNSFENTLPKEIGSLLQLEILKVSENKFSGNIPGELRNLSHLTELQMGGNSFSGSIPMELGSLKSLQIALNLSFNMLTGTIPQELGNLILLEYLLLNNNNLTGEIPSSFASLSSLMGCNFSYNDLRGPIPSIPLFQNMPTSSFIGNKGLCGGPLGDCIGDSSSPSIPSFESINAPRGRIITGIAATIGGVSIVLIVIILYCMRHPPDIVQNKETQSLDSDVYFPPKEGFTFQDLIEATNSFHESCVVGKGACGTVYKAVMHSGQTVAVKKLASNREGSNIENSFRAEISTLGKIRHRNIVKLYGFCYHQGSNLLLYEYMERGSLGELLHGTACNLEWPTRFTIAIGAAEGLAYLHHGCKPRIIHRDIKSNNILLDYNFEAHVGDFGLAKVMDMPQSKSMSAVAGSYGYIAPEYAYTMKVTEKCDIYSYGVVLLELLTGRTPVQPIDQGGDLVTWVRNYMRDHSMSSGMLDQRLNLQDQAMVDHMLTVLKVALMCTSLSPFQRPSMREVVLMLLESTEPDEDHIPALTYNLAPKDDATS 1093
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38045134 38048774 - Lag0016465.1 Lac12g2093 590690
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2093 1093 FunFam Leucine-rich repeat receptor-like protein kinase PEPR1 21 180 - -
Lac12g2093 1093 Gene3D Ribonuclease Inhibitor 274 376 IPR032675 -
Lac12g2093 1093 Gene3D Ribonuclease Inhibitor 172 273 IPR032675 -
Lac12g2093 1093 Pfam Leucine rich repeat N-terminal domain 22 62 IPR013210 -
Lac12g2093 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase isoform B 274 378 - -
Lac12g2093 1093 FunFam Probable leucine-rich repeat receptor-like protein kinase At2g33170 181 271 - -
Lac12g2093 1093 Gene3D Ribonuclease Inhibitor 22 171 IPR032675 -
Lac12g2093 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 402 716 - -
Lac12g2093 1093 SUPERFAMILY Protein kinase-like (PK-like) 773 1067 IPR011009 -
Lac12g2093 1093 ProSiteProfiles Protein kinase domain profile. 796 1068 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2093 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 874 1082 - -
Lac12g2093 1093 Pfam Protein kinase domain 797 1064 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2093 1093 SMART LRR_typ_2 549 570 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 90 114 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 282 306 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 186 210 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 378 402 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 522 546 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 643 666 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 162 185 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 354 377 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 474 498 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 594 618 IPR003591 -
Lac12g2093 1093 SMART LRR_typ_2 234 257 IPR003591 -
Lac12g2093 1093 FunFam Leucine-rich repeat receptor-like serine/threonine-protein kinase 762 873 - -
Lac12g2093 1093 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 317 1072 IPR050647 -
Lac12g2093 1093 Pfam Leucine Rich Repeat 117 138 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 549 570 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 92 114 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 525 546 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 356 377 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 596 618 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 260 282 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 646 667 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 500 522 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 625 643 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 476 498 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 236 258 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 284 306 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 572 594 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 140 162 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 Pfam Leucine Rich Repeat 333 354 IPR001611 GO:0005515(InterPro)
Lac12g2093 1093 SMART serkin_6 796 1067 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2093 1093 ProSitePatterns Serine/Threonine protein kinases active-site signature. 917 929 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2093 1093 SUPERFAMILY L domain-like 24 318 - -
Lac12g2093 1093 Gene3D Ribonuclease Inhibitor 377 719 IPR032675 -
Lac12g2093 1093 SUPERFAMILY L domain-like 376 708 - -
Lac12g2093 1093 Gene3D Transferase(Phosphotransferase) domain 1 874 1081 - -
Lac12g2093 1093 Gene3D Phosphorylase Kinase; domain 1 762 873 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2093 Lac-Chr12:38045134 Lac7g0496 Lac-Chr7:3976680 5.70E-25 dispersed
Lac2g0840 Lac-Chr2:6635619 Lac12g2093 Lac-Chr12:38045134 3.10E-26 dispersed
Lac8g2668 Lac-Chr8:44169849 Lac12g2093 Lac-Chr12:38045134 9.00E-54 dispersed
Lac12g2093 Lac-Chr12:38045134 Lac2g1785 Lac-Chr2:17110849 5.60E-81 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85819 PF00069 Pkinase 3.20E-49 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2093 K27590 - csv:101221337 1899.02