Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2096 ATGGCGGCTTCAAATTGCTCACTGACTCTAGCCCAGTTCCTCGGCTCCAATGTCACCAACCCCACCGGCGCCGCCTCCTTCATCTGCGACCAATTCTCCACCTCCACCACCAACTTCTCCGACACCAAATTCGCCGTCGACACCGTCTACCTCCTCTTCTCCGCCTACCTCGTCTTCTCCATGCAACTCGGCTTCGCCATGCTCTGCGCCGGCTCCGTCCGTGCCAAAAACACCATGAACATCATGCTCACCAACGTCCTCGACGCCGCTGCCGGCGGCCTCTTCTACTACCTCTTCGGCTTCGCTTTCGCCTTCGGTACCCCCTCCAACGTCTTCATCGGCCGCCATTTCTTCGGCCTCAAATCCATCCCTTCCACCGCCGCCGACTACAGCTTCTTCCTCTATCAATGGGCTTTCGCTATTGCCGCCGCCGGCATCACCAGTGGTTCAATTGCCGAGCGGACCCAATTCGTCGCCTACTTGATCTACTCCTCTGTTTTGACCGGTTTTGTCTATCCGGTTGTATCCCACTGGTTCTGGTCCCCGGACGGTTGGGCCAGCCCCTCACGGGTCAACGGCGACCTCCTCTTCGGAACCGGAGTCATCGATTTCGCCGGTTCGGGTGTGGTTCACATGGTCGGCGGAGTCGCCGGACTTTGGGGTGCTTTAATAGAAGGCCCAAGAATCGGGAGGTTCGACAGAACCGGCCGATCCGTTGCACTACGAGGTCACAGCGCTTCCTTAGTCGTTCTCGGTACCTTCATGCTTTGGTTCGGTTGGTACGGGTTCAACCCCGGTTCATTCACTAAAATCCTCGTTCCGTACGGTTCGGGTAATTTCTACGGACAGTGGAGCGCTGTCGGCCGGACCGCCGTGACGACGACGTTGGCCGGATGCACAGCGGCGCTAACGACCCTTTTCGGAAAAAGGATCCTCTCCGGCCACTGGAACGTCACCGATGTCTGCAACGGACTCCTCGGCGGCTTCGCTGCCATAACCTCCGGCTGCTCCGTCGTGGAGCCATGGGCCGCCGTGATATGTGGGTTTGTGGCGGCCTTGGTTCTAATAAGCTGCAACATGCTGGCAGAGAAGGTGAAATTCGACGACCCATTAGAGGCGGCGCAACTGCACGGCGGGTGCGGCGCGTGGGGGATAATTTTCACGGCGCTGTTCGCGACGAAGAAGTATGTGAACGAGGTGTACGGCGGCGATGCGGGGCGGCCGCACGGGCTGTTTATGGGCGGCGGAGGGAAGTTGCTGGGGGCTCATTTGATACAGATTTTGGTGATTTTTGTGTGGGTAAGCGTCACGATGGGGCCGTTGTTCTTCGTGCTTCATAAGCTGAAGCTGCTGAGAATCTCGCCGGAGGATGAGATGGCCGGAATGGATATGACTCGCCACGGTGGATTTGCTTACGTGTACCACGATGAAGATGAATCTCCGGTGAATGGGGTCCAGATGAGGAAGATTAAACCAGGGGAAACGAGTCCAATTGGGAATTAG 1503 57.75 MAASNCSLTLAQFLGSNVTNPTGAASFICDQFSTSTTNFSDTKFAVDTVYLLFSAYLVFSMQLGFAMLCAGSVRAKNTMNIMLTNVLDAAAGGLFYYLFGFAFAFGTPSNVFIGRHFFGLKSIPSTAADYSFFLYQWAFAIAAAGITSGSIAERTQFVAYLIYSSVLTGFVYPVVSHWFWSPDGWASPSRVNGDLLFGTGVIDFAGSGVVHMVGGVAGLWGALIEGPRIGRFDRTGRSVALRGHSASLVVLGTFMLWFGWYGFNPGSFTKILVPYGSGNFYGQWSAVGRTAVTTTLAGCTAALTTLFGKRILSGHWNVTDVCNGLLGGFAAITSGCSVVEPWAAVICGFVAALVLISCNMLAEKVKFDDPLEAAQLHGGCGAWGIIFTALFATKKYVNEVYGGDAGRPHGLFMGGGGKLLGAHLIQILVIFVWVSVTMGPLFFVLHKLKLLRISPEDEMAGMDMTRHGGFAYVYHDEDESPVNGVQMRKIKPGETSPIGN 500
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38090381 38091883 + Lag0016468.1 Lac12g2096 590693
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2096 500 ProSitePatterns Ammonium transporters signature. 203 228 IPR018047 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac12g2096 500 Gene3D Ammonium transporter AmtB like domains 27 490 IPR029020 -
Lac12g2096 500 NCBIfam ammonium transporter 47 472 IPR001905 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac12g2096 500 SUPERFAMILY Ammonium transporter 46 453 - -
Lac12g2096 500 Pfam Ammonium Transporter Family 50 472 IPR024041 GO:0008519(InterPro)|GO:0016020(InterPro)|GO:0072488(InterPro)
Lac12g2096 500 PANTHER AMMONIUM TRANSPORTER 27 479 - GO:0005887(PANTHER)|GO:0008519(PANTHER)|GO:0072488(PANTHER)|GO:0097272(PANTHER)
Lac12g2096 500 FunFam Ammonium transporter 28 487 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac12g2096 Lac-Chr12:38090381 Lac7g0518 Lac-Chr7:4121012 3.50E-232 dispersed
Lac11g2567 Lac-Chr11:41730680 Lac12g2096 Lac-Chr12:38090381 4.20E-198 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2096 K03320 - csv:101212168 911.753