Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2109 ATGCACCGCTTCGCTTCAGGCCTCGCTTCCAAAGCCCGCCTGGCTAGGAATGGTACCAATCAGATTGCTAGTAGATCCAGCTGGAGCAGAAACTATGCGGCTAAAGACGTTAAATTTGGGGTGGAGGCTCGAGGTCTTATGCTTAAGGGTGTTGAAGATCTTGCTGATGCCGTTAAAGTCACAATGGGTCCGAAGGGGCGCAATGTAGTGATTGAACAAAGTTTTGGGGCTCCCAAAGTTACAAAAGATGGTGTGACGGTCGCAAAGAGTATTGAGTTTAAAGATAAAGTTAAAAATGTTGGTGCCAGTCTTGTGAAGCAGGTTGCTAATGCGACCAATGATGTAGCTGGCGATGGAACCACTTGTGCTACCATTCTTACAAGAGCAATATTTACGGAGGGCTGCAAGTCAGTTGCTGCTGGAATGAATGCCATGGATTTAAGACGTGGTATCTCCATGGCTGTTGATTCTGTTGTAACAAACTTGAAGAGTCGAGCACGAATGATAAGCACTTCAGAAGAGATAGCCCAGGTTGGGACAATATCTGCCAATGGAGAAAGAGAAATTGGTGAGTTAATTGCCAAGGCCATGGAGAAAGTTGGCAAGGAGGGCGTGATCACCATCTCAGATGGGAAGACACTGTATAATGAGTTGGAAGTTGTTGAAGGGATGAAGTTAGACAGGGGATATATTTCTCCTTACTTCATTACAAACCAAAAGAACCAGAAATGTGAATTGGACGATCCTCTCATTCTAATCCACGAGAAGAAAATCTCAAGCATAAATGCTGTGGTGAAAGTTTTGGAGTTGGCTTTGAAGAGGCAAAGGCCCCTTCTTATTGTTTCCGAAGATGTTGAAAGTGATGCACTAGCCACTCTTATCCTGAATAAGCTCCGTGCTGGAATTAAGGTCTGTGCCATTAAAGCACCAGGTTTTGGCGAAAATAGGAAGTCTGGACTGCAGGACCTTGCAGTTCTCACGGGTGGTGAACTCATTACGGAAGAGCTTGGAATGAATCTTGAAAAAGTTGATCTGGACATGCTTGGCTCTTGCAAAAAGATCACAATTTCAAAGGATGATACCGTTATTCTTGATGGCGCTGGGGACAAGAAGGCTATTGAGGAAAGATGTGAACAGATAAGGTCGGCTATCGAAGCGAGCACGTCTGATTATGACAAGGAGAAGTTACAGGAGAGATTAGCAAAACTCTCTGGTGGTGTGGCTGTATTGAAGATTGGAGGAGCGAGTGAGGCAGAAGTGGGTGAGAAGAAGGATAGAGTAACAGATGCCTTGAATGCCACAAAAGCAGCTGTTGAAGAAGGAATAGTACCAGGGGGTGGCGTTGCTCTTTTGTATGCATCGAAAGAACTAGATAAACTTCCCACCGCCAACTTCGATCAGAAGATTGGTGTCCAGATTATTCAGAATGCTCTAAAGACACCCGTACACACAATTGCATCGAATGCGGGAGTTGAGGGAGCCGTTGTGGTTGGTAAGCTGTTGGAGCAGGACGACCCTGACCTTGGTTATGATGCTGCAAAAGGTGAATATGTGGACATGGTCAAAGCTGGCATCATCGATCCTCTGAAAGTAATTAGAACTGCACTAGTTGACGCCGCGAGTGTTTCCTCTTTGATGACAACAACCGAAGCCATCGTAGTCGAGCTCCCCAAGGACGAAAAGGAAGTTCCAGCAATGGGTGGTGGCATGGGTGGCATGGATTACTAA 1728 45.72 MHRFASGLASKARLARNGTNQIASRSSWSRNYAAKDVKFGVEARGLMLKGVEDLADAVKVTMGPKGRNVVIEQSFGAPKVTKDGVTVAKSIEFKDKVKNVGASLVKQVANATNDVAGDGTTCATILTRAIFTEGCKSVAAGMNAMDLRRGISMAVDSVVTNLKSRARMISTSEEIAQVGTISANGEREIGELIAKAMEKVGKEGVITISDGKTLYNELEVVEGMKLDRGYISPYFITNQKNQKCELDDPLILIHEKKISSINAVVKVLELALKRQRPLLIVSEDVESDALATLILNKLRAGIKVCAIKAPGFGENRKSGLQDLAVLTGGELITEELGMNLEKVDLDMLGSCKKITISKDDTVILDGAGDKKAIEERCEQIRSAIEASTSDYDKEKLQERLAKLSGGVAVLKIGGASEAEVGEKKDRVTDALNATKAAVEEGIVPGGGVALLYASKELDKLPTANFDQKIGVQIIQNALKTPVHTIASNAGVEGAVVVGKLLEQDDPDLGYDAAKGEYVDMVKAGIIDPLKVIRTALVDAASVSSLMTTTEAIVVELPKDEKEVPAMGGGMGGMDY 575
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38236132 38240541 - Lag0016481.1 Lac12g2109 590706

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2109 575 NCBIfam chaperonin GroEL 34 558 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 SUPERFAMILY GroEL apical domain-like 216 407 IPR027409 -
Lac12g2109 575 Hamap Chaperonin GroEL [groEL]. 33 573 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 Pfam TCP-1/cpn60 chaperonin family 54 554 IPR002423 GO:0005524(InterPro)
Lac12g2109 575 FunFam 60 kDa chaperonin 37 230 - -
Lac12g2109 575 SUPERFAMILY GroEL equatorial domain-like 38 553 IPR027413 -
Lac12g2109 575 SUPERFAMILY GroEL-intermediate domain like 169 235 IPR027410 -
Lac12g2109 575 ProSitePatterns Chaperonins cpn60 signature. 436 447 IPR018370 GO:0005524(InterPro)|GO:0006457(InterPro)
Lac12g2109 575 Gene3D - 37 554 IPR027413 -
Lac12g2109 575 CDD GroEL 35 555 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 Gene3D GroEL 223 404 IPR027409 -
Lac12g2109 575 FunFam 60 kDa chaperonin 223 404 - -
Lac12g2109 575 Gene3D - 168 441 IPR027410 -
Lac12g2109 575 PANTHER 60 KDA HEAT SHOCK PROTEIN, MITOCHONDRIAL 28 562 IPR001844 GO:0005739(PANTHER)|GO:0005829(PANTHER)|GO:0006457(PANTHER)|GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 PRINTS 60kDa chaperonin signature 114 141 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 PRINTS 60kDa chaperonin signature 299 322 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 PRINTS 60kDa chaperonin signature 58 84 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 PRINTS 60kDa chaperonin signature 429 450 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
Lac12g2109 575 PRINTS 60kDa chaperonin signature 381 406 IPR001844 GO:0042026(InterPro)|GO:0140662(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2109 K04077 - - csv:101210207 1076.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g2646 Lac-Chr10:40581032 Lac12g2109 Lac-Chr12:38236132 2.00E-63 dispersed
Lac12g2109 Lac-Chr12:38236132 Lac4g2047 Lac-Chr4:40078009 1.10E-280 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g828 Blo01g00313 Blo12g00132 Bda03g01108 . Bpe04g01053 . Bma04g01034 Bma05g01268 . . . . . . . . . . . . . . . . Cla06g00710 Cam06g0764 Cec06g0768 Cco06g0779 Clacu06g0752 Cmu06g0735 Cre06g1515 Cone14ag0201 Cone15ag0219 . Cone4ag0377 . . . . . . . . Bpe05g01123 . . . . . . . . . . . Cpe17g00226 Bhi12g01535 . . Lac12g2109 . . . . . . . . . . . . . Cme05g00632
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000827 3 3 3 3 3 3 4 3 3 2 3 3 4 2 3 4 3 5 4 3 3 2 3 3 3 2 3 4 2 2 91