Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2125 ATGGCCGGTGAGGTAGCGGTGGAGGGTGCTGCGGCGGCGGCCGCCGAAGTAGCCGATTCGAATCAACAGTCCCACAAATTGGAGAGAAAATGGACTTTTTGGTTCGATAACCAGTCGAGGCCGAAGCAAGGTGCGGCTTGGGGCACCTCTCTGCGCAAGGTCTATACCTTCGACACCGTCGAAGAATTTTGGTGTTTGTATGATCAGATATTCAAGCCAAGCAAGCTGCCGGCTAATGCAGATTTCCATTTGTTCAAATCTGGAGTTGAGCCGAAATGGGAAGATCCTGAGTGCGCTAATGGAGGAAAATGGACTGTCACGAGCAGTAGAAAGGCTAACCTCGATAACATGTGGCTGGAAACGTTGATGGCTCTAATTGGGGAACAATTTGAGGAGTCTGATGAGATCTGTGGCGTAGTTGCTAGTGTGCGCCAGAGGCAGGACAAACTTGCATTGTGGACCAAGACAGCTACAAATGAGGCTGCTCAGATGAGCATTGGTAGGAAATGGAAGGAGATCATCGACGTCAACGACAAGATTTCCTTCAGCTTTCATGAGGATTTGAGAAGGGAAAAGTCAGCAAAAGCTCGATACAGTGTCTGA 603 49.42 MAGEVAVEGAAAAAAEVADSNQQSHKLERKWTFWFDNQSRPKQGAAWGTSLRKVYTFDTVEEFWCLYDQIFKPSKLPANADFHLFKSGVEPKWEDPECANGGKWTVTSSRKANLDNMWLETLMALIGEQFEESDEICGVVASVRQRQDKLALWTKTATNEAAQMSIGRKWKEIIDVNDKISFSFHEDLRREKSAKARYSV 200
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38404335 38406246 + Lag0016497.1 Lac12g2125 590722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2125 200 ProSitePatterns Eukaryotic initiation factor 4E signature. 81 104 IPR019770 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0005737(InterPro)|GO:0006413(InterPro)
Lac12g2125 200 Coils Coil 10 30 - -
Lac12g2125 200 Gene3D RNA Cap, Translation Initiation Factor Eif4e 15 200 IPR023398 -
Lac12g2125 200 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4E RELATED 16 193 IPR001040 GO:0000340(PANTHER)|GO:0003723(InterPro)|GO:0003743(PANTHER)|GO:0003743(InterPro)|GO:0006413(InterPro)|GO:0016281(PANTHER)
Lac12g2125 200 FunFam Eukaryotic translation initiation factor 4E 16 200 - -
Lac12g2125 200 SUPERFAMILY eIF4e-like 21 193 IPR023398 -
Lac12g2125 200 Pfam Eukaryotic initiation factor 4E 26 182 IPR001040 GO:0003723(InterPro)|GO:0003743(InterPro)|GO:0006413(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g1005 Lac-Chr10:8072355 Lac12g2125 Lac-Chr12:38404335 4.70E-60 dispersed
Lac12g2125 Lac-Chr12:38404335 Lac7g1688 Lac-Chr7:21140341 8.00E-26 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2125 K03259 - csv:101208495 381.719