Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lac12g2162 ATGGAAGCTACTAGGTGTTGGTTTAATAAGCTCAGATCCAAAGACAAGCCAAAGGCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCGAGAGCACCAACCAGTGAAGAGGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATTGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTATTAGAAAGGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGAAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCGATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAACCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACAGAAGATGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATTGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCTGATAACTTGCTTCTGGACAAGGATGGCCATATGAAACTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAATAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACGCAACAGGAACAACTACAACATTGGCAAAGGAACAGGCGGATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTTTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTAGTGGGATATCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCAAAGGATCTAATCAGTAAACTCTTGTGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACCCAATTCAGACGTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCAAAGGATATCAATTTTGTGGGTTACACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGCTGAATTGAAGAAGAAGAGTGCGAAATCTAAAAGACCTTCCATCAAATCTCTTTTCGATAACGAATCTGCAATGGCGACCAATCAGCCTGTTCAAGGCAGCTTTTTAAAGCTCTTGCCTCCCCAACTAGAAGTCCCCGAGAAACCGATGAACGCCAATGAGAAGCACTCATGA 1659 41.05 MEATRCWFNKLRSKDKPKASTNKESTGNARDASRAPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLERKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENPIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSAKSKRPSIKSLFDNESAMATNQPVQGSFLKLLPPQLEVPEKPMNANEKHS 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
12 38708462 38714695 - Lag0016534.1 Lac12g2162 590759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lac12g2162 552 CDD STKc_NDR_like 117 482 - -
Lac12g2162 552 SMART pkinase_C_6 419 483 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 Gene3D Transferase(Phosphotransferase) domain 1 205 435 - -
Lac12g2162 552 FunFam Non-specific serine/threonine protein kinase 317 436 - -
Lac12g2162 552 ProSitePatterns Serine/Threonine protein kinases active-site signature. 238 250 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 Coils Coil 68 102 - -
Lac12g2162 552 SUPERFAMILY Protein kinase-like (PK-like) 94 471 IPR011009 -
Lac12g2162 552 CDD MobB_NDR_LATS-like 53 114 - -
Lac12g2162 552 ProSitePatterns Protein kinases ATP-binding region signature. 125 148 IPR017441 GO:0005524(InterPro)
Lac12g2162 552 ProSiteProfiles Protein kinase domain profile. 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 MobiDBLite consensus disorder prediction 22 50 - -
Lac12g2162 552 MobiDBLite consensus disorder prediction 1 50 - -
Lac12g2162 552 MobiDBLite consensus disorder prediction 7 21 - -
Lac12g2162 552 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 SMART serkin_6 119 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 FunFam Non-specific serine/threonine protein kinase 90 202 - -
Lac12g2162 552 FunFam Non-specific serine/threonine protein kinase 203 270 - -
Lac12g2162 552 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 PANTHER SERINE/THREONINE-PROTEIN KINASE 15 485 IPR050236 GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER)
Lac12g2162 552 Pfam Protein kinase domain 315 418 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 Pfam Protein kinase domain 121 270 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Lac12g2162 552 Gene3D Phosphorylase Kinase; domain 1 108 204 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Lac10g0003 Lac-Chr10:37896 Lac12g2162 Lac-Chr12:38708462 3.60E-72 dispersed
Lac11g1572 Lac-Chr11:27336246 Lac12g2162 Lac-Chr12:38708462 3.40E-57 dispersed
Lac12g2162 Lac-Chr12:38708462 Lac4g1857 Lac-Chr4:37880167 1.40E-245 dispersed
Lac12g2162 Lac-Chr12:38708462 Lac2g0475 Lac-Chr2:3485174 2.10E-185 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
85821 PF00069 Pkinase 4.70E-66 CL0016 Lac PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lac12g2162 K08790 - csv:101205120 1088.94