Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lac12g2162 | ATGGAAGCTACTAGGTGTTGGTTTAATAAGCTCAGATCCAAAGACAAGCCAAAGGCCTCAACAAATAAGGAGAGTACAGGCAATGCAAGAGATGCATCGAGAGCACCAACCAGTGAAGAGGTACCCTCAAATGTCACCAAGCAGAAGGTTGCAGCTGCCAAACAGTATATTGAAAACCATTACAAGAAGCAAATGAAGAGCTTGGAAGAAAGGAGGGAGAGACGCCATGTATTAGAAAGGAAGTTGGCTGATGCTGAGGTCTCTCAAGAAGAGCAAAGCAACCTGCTTAAGCATCTAGAGAAGAAGGAAACAGAGTATATGCGTCTTCAGAGGCATAAAATGGGTGCTGATGATTTTGAGCCACTAACAATGATAGGAAGGGGTGCTTTTGGAGAGGTTAGAGTTTGTCGGGAGAAAGCAACTGGCCATGTATATGCGATGAAGAAGCTTAAGAAATCAGAGATGCTTCGAAGAGGCCAGGTTGAACATGTGAAAGCTGAAAGGAACCTATTGGCGGAGGTTGACAGTAATTGTATTGTAAAGCTGTACTGCTCTTTCCAAGATGAAGAGTATTTATATCTTATTATGGAATACTTACCTGGTGGAGATATGATGACTTTGCTGATGAGGAAAGATACTCTAACAGAAGATGAGGCCCGATTTTATGTTGGTGAAACAGTTTTAGCTATTGAGTCAATCCATAAACATAATTATATTCATAGAGATATCAAGCCTGATAACTTGCTTCTGGACAAGGATGGCCATATGAAACTATCAGATTTTGGATTATGTAAACCATTAGATTGTAGTAACCTCCAAGAAAAGGATTTTTCCCAGGGAAATAACCTTAGTGGTGCTCTTCAAAGTGATGGGCGTCCTGTGGCATCAAAACGCACGCAACAGGAACAACTACAACATTGGCAAAGGAACAGGCGGATGCTTGCTTATTCTACAGTTGGAACTCCTGATTATATTGCTCCGGAAGTTTTGCTGAAGAAAGGATATGGAATGGAATGTGATTGGTGGTCACTTGGTGCCATCATGTATGAAATGCTAGTGGGATATCCACCGTTTTACTCAGATGAGCCAATGTCAACTTGTAGGAAGATAGTTAATTGGAGAACTCATTTGAAATTTCCAGAAGAAGCAAAACTCTCTCCAGAAGCAAAGGATCTAATCAGTAAACTCTTGTGCAATGTTGAACAAAGGCTTGGGACCAAGGGTGCAGATGAAATAAAGGCGCACCCATGGTTCAAGGGCATTGAGTGGGATAAGTTGTATCAAATGAAAGCTGCATTTATTCCTGAGGTCAATGATGAATTGGATACTCAAAATTTTGAGAAGTTTGAAGAGACTGAAAACCCAATTCAGACGTCATCAAAATCAGGTCCATGGAGAAAGATGTTGTCATCAAAGGATATCAATTTTGTGGGTTACACGTACAAAAACTTTGAAATCATTGATGATAATCAATTGCCTGGAATCGCTGAATTGAAGAAGAAGAGTGCGAAATCTAAAAGACCTTCCATCAAATCTCTTTTCGATAACGAATCTGCAATGGCGACCAATCAGCCTGTTCAAGGCAGCTTTTTAAAGCTCTTGCCTCCCCAACTAGAAGTCCCCGAGAAACCGATGAACGCCAATGAGAAGCACTCATGA | 1659 | 41.05 | MEATRCWFNKLRSKDKPKASTNKESTGNARDASRAPTSEEVPSNVTKQKVAAAKQYIENHYKKQMKSLEERRERRHVLERKLADAEVSQEEQSNLLKHLEKKETEYMRLQRHKMGADDFEPLTMIGRGAFGEVRVCREKATGHVYAMKKLKKSEMLRRGQVEHVKAERNLLAEVDSNCIVKLYCSFQDEEYLYLIMEYLPGGDMMTLLMRKDTLTEDEARFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKDGHMKLSDFGLCKPLDCSNLQEKDFSQGNNLSGALQSDGRPVASKRTQQEQLQHWQRNRRMLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDEPMSTCRKIVNWRTHLKFPEEAKLSPEAKDLISKLLCNVEQRLGTKGADEIKAHPWFKGIEWDKLYQMKAAFIPEVNDELDTQNFEKFEETENPIQTSSKSGPWRKMLSSKDINFVGYTYKNFEIIDDNQLPGIAELKKKSAKSKRPSIKSLFDNESAMATNQPVQGSFLKLLPPQLEVPEKPMNANEKHS | 552 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
12 | 38708462 | 38714695 | - | Lag0016534.1 | Lac12g2162 | 590759 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lac12g2162 | 552 | CDD | STKc_NDR_like | 117 | 482 | - | - | |
Lac12g2162 | 552 | SMART | pkinase_C_6 | 419 | 483 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | Gene3D | Transferase(Phosphotransferase) domain 1 | 205 | 435 | - | - | |
Lac12g2162 | 552 | FunFam | Non-specific serine/threonine protein kinase | 317 | 436 | - | - | |
Lac12g2162 | 552 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 238 | 250 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | Coils | Coil | 68 | 102 | - | - | |
Lac12g2162 | 552 | SUPERFAMILY | Protein kinase-like (PK-like) | 94 | 471 | IPR011009 | - | |
Lac12g2162 | 552 | CDD | MobB_NDR_LATS-like | 53 | 114 | - | - | |
Lac12g2162 | 552 | ProSitePatterns | Protein kinases ATP-binding region signature. | 125 | 148 | IPR017441 | GO:0005524(InterPro) | |
Lac12g2162 | 552 | ProSiteProfiles | Protein kinase domain profile. | 119 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | MobiDBLite | consensus disorder prediction | 22 | 50 | - | - | |
Lac12g2162 | 552 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
Lac12g2162 | 552 | MobiDBLite | consensus disorder prediction | 7 | 21 | - | - | |
Lac12g2162 | 552 | ProSiteProfiles | AGC-kinase C-terminal domain profile. | 419 | 491 | IPR000961 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | SMART | serkin_6 | 119 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | FunFam | Non-specific serine/threonine protein kinase | 90 | 202 | - | - | |
Lac12g2162 | 552 | FunFam | Non-specific serine/threonine protein kinase | 203 | 270 | - | - | |
Lac12g2162 | 552 | Pfam | Protein kinase C terminal domain | 437 | 481 | IPR017892 | GO:0004674(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | PANTHER | SERINE/THREONINE-PROTEIN KINASE | 15 | 485 | IPR050236 | GO:0004674(PANTHER)|GO:0018105(PANTHER)|GO:0035556(PANTHER) | |
Lac12g2162 | 552 | Pfam | Protein kinase domain | 315 | 418 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | Pfam | Protein kinase domain | 121 | 270 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Lac12g2162 | 552 | Gene3D | Phosphorylase Kinase; domain 1 | 108 | 204 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Lac10g0003 | Lac-Chr10:37896 | Lac12g2162 | Lac-Chr12:38708462 | 3.60E-72 | dispersed | |
Lac11g1572 | Lac-Chr11:27336246 | Lac12g2162 | Lac-Chr12:38708462 | 3.40E-57 | dispersed | |
Lac12g2162 | Lac-Chr12:38708462 | Lac4g1857 | Lac-Chr4:37880167 | 1.40E-245 | dispersed | |
Lac12g2162 | Lac-Chr12:38708462 | Lac2g0475 | Lac-Chr2:3485174 | 2.10E-185 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
85821 | PF00069 | Pkinase | 4.70E-66 | CL0016 | Lac | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lac12g2162 | K08790 | - | csv:101205120 | 1088.94 |